OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Nine quick tips for pathway enrichment analysis
Davide Chicco, Giuseppe Agapito
PLoS Computational Biology (2022) Vol. 18, Iss. 8, pp. e1010348-e1010348
Open Access | Times Cited: 44
Davide Chicco, Giuseppe Agapito
PLoS Computational Biology (2022) Vol. 18, Iss. 8, pp. e1010348-e1010348
Open Access | Times Cited: 44
Showing 1-25 of 44 citing articles:
PTMNavigator: interactive visualization of differentially regulated post-translational modifications in cellular signaling pathways
Julian Müller, Florian Bayer, Mathias Wilhelm, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
Julian Müller, Florian Bayer, Mathias Wilhelm, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
Interpreting omics data with pathway enrichment analysis
Kangmei Zhao, Seung Y. Rhee
Trends in Genetics (2023) Vol. 39, Iss. 4, pp. 308-319
Open Access | Times Cited: 38
Kangmei Zhao, Seung Y. Rhee
Trends in Genetics (2023) Vol. 39, Iss. 4, pp. 308-319
Open Access | Times Cited: 38
Eight quick tips for biologically and medically informed machine learning
Luca Oneto, Davide Chicco
PLoS Computational Biology (2025) Vol. 21, Iss. 1, pp. e1012711-e1012711
Open Access | Times Cited: 1
Luca Oneto, Davide Chicco
PLoS Computational Biology (2025) Vol. 21, Iss. 1, pp. e1012711-e1012711
Open Access | Times Cited: 1
Eleven quick tips for data cleaning and feature engineering
Davide Chicco, Luca Oneto, Erica Tavazzi
PLoS Computational Biology (2022) Vol. 18, Iss. 12, pp. e1010718-e1010718
Open Access | Times Cited: 31
Davide Chicco, Luca Oneto, Erica Tavazzi
PLoS Computational Biology (2022) Vol. 18, Iss. 12, pp. e1010718-e1010718
Open Access | Times Cited: 31
Ten quick tips for avoiding pitfalls in multi-omics data integration analyses
Davide Chicco, Fabio Cumbo, Claudio Angione
PLoS Computational Biology (2023) Vol. 19, Iss. 7, pp. e1011224-e1011224
Open Access | Times Cited: 18
Davide Chicco, Fabio Cumbo, Claudio Angione
PLoS Computational Biology (2023) Vol. 19, Iss. 7, pp. e1011224-e1011224
Open Access | Times Cited: 18
Ten quick tips for computational analysis of medical images
Davide Chicco, Rakesh Shiradkar
PLoS Computational Biology (2023) Vol. 19, Iss. 1, pp. e1010778-e1010778
Open Access | Times Cited: 14
Davide Chicco, Rakesh Shiradkar
PLoS Computational Biology (2023) Vol. 19, Iss. 1, pp. e1010778-e1010778
Open Access | Times Cited: 14
A brief survey of tools for genomic regions enrichment analysis
Davide Chicco, Giuseppe Jurman
Frontiers in Bioinformatics (2022) Vol. 2
Open Access | Times Cited: 20
Davide Chicco, Giuseppe Jurman
Frontiers in Bioinformatics (2022) Vol. 2
Open Access | Times Cited: 20
Application of a high-throughput swarm-based deep neural network Algorithm reveals SPAG5 downregulation as a potential therapeutic target in adult AML
Chinyere I Ajonu, Robert I. Grundy, Graham Ball, et al.
Functional & Integrative Genomics (2025) Vol. 25, Iss. 1
Open Access
Chinyere I Ajonu, Robert I. Grundy, Graham Ball, et al.
Functional & Integrative Genomics (2025) Vol. 25, Iss. 1
Open Access
Potential Adaptive Introgression From Dogs in Iberian Grey Wolves (Canis lupus )
Carlos Sarabia, Isabel Salado, Alberto Fernández‐Gil, et al.
Molecular Ecology (2025)
Open Access
Carlos Sarabia, Isabel Salado, Alberto Fernández‐Gil, et al.
Molecular Ecology (2025)
Open Access
A teaching proposal for a short course on biomedical data science
Davide Chicco, Vasco Coelho
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012946-e1012946
Open Access
Davide Chicco, Vasco Coelho
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012946-e1012946
Open Access
PathwayMind: An Innovative Tool and Database for Pathway Perturbation Analysis, Uncovering Critical Pathways for Drugs and Target Protein Sets
O. P. Sharma
Computational Biology and Chemistry (2025) Vol. 118, pp. 108466-108466
Closed Access
O. P. Sharma
Computational Biology and Chemistry (2025) Vol. 118, pp. 108466-108466
Closed Access
Genomic and Behavioral Signatures of Selection for Ethanol Preference from the Heterogeneous Stock Collaborative Cross Mice – The Central Nucleus of the Amygdala
Justin Q. Anderson, Priscila Darakjian, Robert Hitzemann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Justin Q. Anderson, Priscila Darakjian, Robert Hitzemann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
The effect of fatty acid binding protein-3 exposure on endothelial transcriptomics
Hien C. Nguyen, Aman Singh, Christina A. Castellani, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Hien C. Nguyen, Aman Singh, Christina A. Castellani, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Genes adaptability and NOL6 protein inhibition studies of fabricated flavan-3-ols lead skeleton intended to treat breast carcinoma
S. Mohammed Zaidh, Kiran Balasaheb Aher, Girija Balasaheb Bhavar, et al.
International Journal of Biological Macromolecules (2023) Vol. 258, pp. 127661-127661
Closed Access | Times Cited: 10
S. Mohammed Zaidh, Kiran Balasaheb Aher, Girija Balasaheb Bhavar, et al.
International Journal of Biological Macromolecules (2023) Vol. 258, pp. 127661-127661
Closed Access | Times Cited: 10
Plasma Proteomic Signatures of Physical Activity Provide Insights into Biological Impacts of Physical Activity and its Protective Role Against Dementia.
Gayatri Arani, Amit Arora, Shuai Yang, et al.
medRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Gayatri Arani, Amit Arora, Shuai Yang, et al.
medRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Effects of light exposure during IVF: transcriptomic analysis of murine embryos and embryo-derived EVs
Bence Nagy, Zoltán Bognár, Tímea Csabai, et al.
Frontiers in Immunology (2025) Vol. 16
Open Access
Bence Nagy, Zoltán Bognár, Tímea Csabai, et al.
Frontiers in Immunology (2025) Vol. 16
Open Access
Ontolomics-P: Advancing Proteomics Data Interpretation through GPT-4o Reannotated Topic Ontology and Data-Driven Analysis
Yin Yang, Shisheng Wang, Yu‐Zhe Chen, et al.
Analytical Chemistry (2025)
Closed Access
Yin Yang, Shisheng Wang, Yu‐Zhe Chen, et al.
Analytical Chemistry (2025)
Closed Access
Genomic and Behavioral Signatures of Selection for Ethanol Preference from the Heterogeneous Stock Collaborative Cross Mice – The Central Nucleus of the Amygdala
Justin Q. Anderson, Priscila Darakjian, Robert Hitzemann, et al.
Addiction Neuroscience (2025), pp. 100209-100209
Open Access
Justin Q. Anderson, Priscila Darakjian, Robert Hitzemann, et al.
Addiction Neuroscience (2025), pp. 100209-100209
Open Access
Integration of transcriptomics and metabolomics analysis for unveiling the toxicological profile in the liver of mice exposed to uranium in drinking water
Ruixia Wang, Yongjiu Chen, Jiahao Chen, et al.
Environmental Pollution (2023) Vol. 335, pp. 122296-122296
Closed Access | Times Cited: 9
Ruixia Wang, Yongjiu Chen, Jiahao Chen, et al.
Environmental Pollution (2023) Vol. 335, pp. 122296-122296
Closed Access | Times Cited: 9
Combined inhibition of EZH2 and CDK4/6 perturbs endoplasmic reticulum-mitochondrial homeostasis and increases antitumor activity against glioblastoma
Thomas Freitag, Philipp Kaps, Justus Ramtke, et al.
npj Precision Oncology (2024) Vol. 8, Iss. 1
Open Access | Times Cited: 3
Thomas Freitag, Philipp Kaps, Justus Ramtke, et al.
npj Precision Oncology (2024) Vol. 8, Iss. 1
Open Access | Times Cited: 3
Mitotic abnormalities precede microsatellite instability in lynch syndrome-associated colorectal tumourigenesis
Marjaana Pussila, Aleksi Laiho, Petri Törönen, et al.
EBioMedicine (2024) Vol. 103, pp. 105111-105111
Open Access | Times Cited: 2
Marjaana Pussila, Aleksi Laiho, Petri Törönen, et al.
EBioMedicine (2024) Vol. 103, pp. 105111-105111
Open Access | Times Cited: 2
Genes Differentially Expressed Across Major Arteries Are Enriched in Endothelial Dysfunction-Related Gene Sets: Implications for Relative Inter-artery Atherosclerosis Risk
Paul A. Brown
Bioinformatics and Biology Insights (2024) Vol. 18
Open Access | Times Cited: 2
Paul A. Brown
Bioinformatics and Biology Insights (2024) Vol. 18
Open Access | Times Cited: 2
Transcriptomic Approach for Investigation of Solanum spp. Resistance upon Early-Stage Broomrape Parasitism
Maria Gerakari, Vasiliki Kotsira, Aliki Kapazoglou, et al.
Current Issues in Molecular Biology (2024) Vol. 46, Iss. 8, pp. 9047-9073
Open Access | Times Cited: 2
Maria Gerakari, Vasiliki Kotsira, Aliki Kapazoglou, et al.
Current Issues in Molecular Biology (2024) Vol. 46, Iss. 8, pp. 9047-9073
Open Access | Times Cited: 2
An Exploratory Application of Multilayer Networks and Pathway Analysis in Pharmacogenomics
Marianna Milano, Giuseppe Agapito, Mario Cannataro
Genes (2023) Vol. 14, Iss. 10, pp. 1915-1915
Open Access | Times Cited: 5
Marianna Milano, Giuseppe Agapito, Mario Cannataro
Genes (2023) Vol. 14, Iss. 10, pp. 1915-1915
Open Access | Times Cited: 5
Ten quick tips for bioinformatics analyses using an Apache Spark distributed computing environment
Davide Chicco, Umberto Ferraro Petrillo, Giuseppe Cattaneo
PLoS Computational Biology (2023) Vol. 19, Iss. 7, pp. e1011272-e1011272
Open Access | Times Cited: 4
Davide Chicco, Umberto Ferraro Petrillo, Giuseppe Cattaneo
PLoS Computational Biology (2023) Vol. 19, Iss. 7, pp. e1011272-e1011272
Open Access | Times Cited: 4
