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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

RNA Imaging with Multiplexed Error-Robust Fluorescence In Situ Hybridization (MERFISH)
Jeffrey R. Moffitt, Xiaowei Zhuang
Methods in enzymology on CD-ROM/Methods in enzymology (2016), pp. 1-49
Open Access | Times Cited: 187

Showing 26-50 of 187 citing articles:

Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei
Leah F. Rosin, Son C. Nguyen, Eric F. Joyce
PLoS Genetics (2018) Vol. 14, Iss. 7, pp. e1007393-e1007393
Open Access | Times Cited: 98
In Situ Super-Resolution Imaging of Genomic DNA with OligoSTORM and OligoDNA-PAINT
Brian J. Beliveau, Alistair N. Boettiger, Guy Nir, et al.
Methods in molecular biology (2017), pp. 231-252
Open Access | Times Cited: 88
Transcriptional Heterogeneity of Beta Cells in the Intact Pancreas
Lydia Farack, Matan Golan, Adi Egozi, et al.
Developmental Cell (2018) Vol. 48, Iss. 1, pp. 115-125.e4
Open Access | Times Cited: 86
Joint cell segmentation and cell type annotation for spatial transcriptomics
Russell Littman, Zachary Hemminger, Rob Foreman, et al.
Molecular Systems Biology (2021) Vol. 17, Iss. 6
Open Access | Times Cited: 74
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors
Wenliang Wang, Aditi Chandra, Naomi Goldman, et al.
Nature Immunology (2022) Vol. 23, Iss. 7, pp. 1052-1062
Open Access | Times Cited: 64
High-plex Multiomic Analysis in FFPE at Subcellular Level by Spatial Molecular Imaging
Shanshan He, Ruchir Bhatt, Carl Brown, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Closed Access | Times Cited: 62
Spatial transcriptomics reveals the distinct organization of mouse prefrontal cortex and neuronal subtypes regulating chronic pain
Aritra Bhattacherjee, Chao Zhang, Brianna R. Watson, et al.
Nature Neuroscience (2023) Vol. 26, Iss. 11, pp. 1880-1893
Open Access | Times Cited: 30
Mapping spatial organization and genetic cell-state regulators to target immune evasion in ovarian cancer
Christine Y. Yeh, Karmen Aguirre, Olivia Laveroni, et al.
Nature Immunology (2024) Vol. 25, Iss. 10, pp. 1943-1958
Open Access | Times Cited: 14
Spatial mapping of mobile genetic elements and their bacterial hosts in complex microbiomes
Benjamin Grodner, Hao Shi, Owen Farchione, et al.
Nature Microbiology (2024) Vol. 9, Iss. 9, pp. 2262-2277
Open Access | Times Cited: 12
Spotiphy enables single-cell spatial whole transcriptomics across an entire section
Jiyuan Yang, Ziqian Zheng, Yun Jiao, et al.
Nature Methods (2025)
Open Access | Times Cited: 1
Conserved spatial subtypes and cellular neighborhoods of cancer-associated fibroblasts revealed by single-cell spatial multi-omics
Yunhe Liu, Ansam Sinjab, Jimin Min, et al.
Cancer Cell (2025)
Closed Access | Times Cited: 1
From “Cellular” RNA to “Smart” RNA: Multiple Roles of RNA in Genome Stability and Beyond
Flavia Michelini, Ameya P. Jalihal, Sofia Francia, et al.
Chemical Reviews (2018) Vol. 118, Iss. 8, pp. 4365-4403
Open Access | Times Cited: 76
Behavior-related gene regulatory networks: A new level of organization in the brain
Saurabh Sinha, Beryl M. Jones, Ian M. Traniello, et al.
Proceedings of the National Academy of Sciences (2020) Vol. 117, Iss. 38, pp. 23270-23279
Open Access | Times Cited: 67
LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism
Min Zeng, Yifan Wu, Yiming Li, et al.
Bioinformatics (2023) Vol. 39, Iss. 12
Open Access | Times Cited: 20
Single-cell omics: A new direction for functional genetic research in human diseases and animal models
Siyuan Kong, Rongrong Li, Yun‐Han Tian, et al.
Frontiers in Genetics (2023) Vol. 13
Open Access | Times Cited: 19
Deep Learning in Single-cell Analysis
Dylan Molho, Jiayuan Ding, Wenzhuo Tang, et al.
ACM Transactions on Intelligent Systems and Technology (2024) Vol. 15, Iss. 3, pp. 1-62
Open Access | Times Cited: 7
Advances and applications in single-cell and spatial genomics
Jingjing Wang, Fang Ye, Haoxi Chai, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 7
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture
Eleni Gelali, Gabriele Girelli, Masahiro Matsumoto, et al.
Nature Communications (2019) Vol. 10, Iss. 1
Open Access | Times Cited: 53
Investigating Tumor Heterogeneity in Mouse Models
Tuomas Tammela, Julien Sage
Annual Review of Cancer Biology (2019) Vol. 4, Iss. 1, pp. 99-119
Open Access | Times Cited: 52
Transcriptional Spatial Profiling of Cancer Tissues in the Era of Immunotherapy: The Potential and Promise
Sanjna Nilesh Nerurkar, Denise Goh, Chun Chau Lawrence Cheung, et al.
Cancers (2020) Vol. 12, Iss. 9, pp. 2572-2572
Open Access | Times Cited: 48
Illuminating RNA trafficking and functional delivery by extracellular vesicles
Willemijn S. de Voogt, Marvin E. Tanenbaum, Pieter Vader
Advanced Drug Delivery Reviews (2021) Vol. 174, pp. 250-264
Open Access | Times Cited: 40
Morphological pseudotime ordering and fate mapping reveal diversification of cerebellar inhibitory interneurons
Wendy Xueyi Wang, Julie L. Lefebvre
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 23
Glioblastoma is spatially organized by neurodevelopmental programs and a glial-like wound healing response
Alejandro Mossi Albiach, Jokubas Janusauskas, Ivana Kapustová, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
MNMST: topology of cell networks leverages identification of spatial domains from spatial transcriptomics data
Yu Wang, Zaiyi Liu, Xiaoke Ma
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 6
A point cloud segmentation framework for image-based spatial transcriptomics
Thomas Defard, Hugo Laporte, Mallick Ayan, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 6

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