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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Morphology and gene expression profiling provide complementary information for mapping cell state
Gregory P. Way, Ted Natoli, Adeniyi Adeboye, et al.
Cell Systems (2022) Vol. 13, Iss. 11, pp. 911-923.e9
Open Access | Times Cited: 83

Showing 26-50 of 83 citing articles:

A Pooled Cell Painting CRISPR Screening Platform Enables de novo Inference of Gene Function by Self-supervised Deep Learning
Srinivasan Sivanandan, Bobby Leitmann, Eric Lubeck, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 20
A versatile information retrieval framework for evaluating profile strength and similarity
Alexandr A. Kalinin, John Arévalo, Loan Vulliard, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Building, benchmarking, and exploring perturbative maps of transcriptional and morphological data
Safiye Çelik, Jan-Christian Hütter, Sandra Melo Carlos, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 10, pp. e1012463-e1012463
Open Access | Times Cited: 6
Assessment of Drug-Induced Liver Injury through Cell Morphology and Gene Expression Analysis
Vanille Lejal, Natacha Cerisier, David Rouquié, et al.
Chemical Research in Toxicology (2023) Vol. 36, Iss. 9, pp. 1456-1470
Open Access | Times Cited: 15
Evaluating batch correction methods for image-based cell profiling
John Arévalo, Ellen Su, Robert van Dijk, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 15
Using Transcriptomics and Cell Morphology Data in Drug Discovery: The Long Road to Practice
Lavinia-Lorena Pruteanu, Andreas Bender
ACS Medicinal Chemistry Letters (2023) Vol. 14, Iss. 4, pp. 386-395
Open Access | Times Cited: 14
Interpreting Image‐based Profiles using Similarity Clustering and Single‐Cell Visualization
Fernanda Garcia-Fóssa, Mário Costa Cruz, Marzieh Haghighi, et al.
Current Protocols (2023) Vol. 3, Iss. 3
Open Access | Times Cited: 13
From Pipeline to Plant Protection Products: Using New Approach Methodologies (NAMs) in Agrochemical Safety Assessment
Joseph E. Henriquez, Vivek D. Badwaik, Enrica Bianchi, et al.
Journal of Agricultural and Food Chemistry (2024) Vol. 72, Iss. 19, pp. 10710-10724
Closed Access | Times Cited: 5
High throughput microscopy and single cell phenotypic image-based analysis in toxicology and drug discovery
Fabio Stossi, Pankaj K. Singh, Kazem Safari, et al.
Biochemical Pharmacology (2023) Vol. 216, pp. 115770-115770
Closed Access | Times Cited: 12
Assessing the performance of the Cell Painting assay across different imaging systems
Callum Tromans‐Coia, Nasim Jamali, Hamdah Shafqat Abbasi, et al.
Cytometry Part A (2023) Vol. 103, Iss. 11, pp. 915-926
Open Access | Times Cited: 12
OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 11
Morphological profiling for drug discovery in the era of deep learning
Qiaosi Tang, Ranjala Ratnayake, Gustavo Seabra, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 4
Cell-vision fusion: A Swin transformer-based approach for predicting kinase inhibitor mechanism of action from Cell Painting data
William Dee, Inês Sequeira, Anna Lobley, et al.
iScience (2024) Vol. 27, Iss. 8, pp. 110511-110511
Open Access | Times Cited: 4
Causal modeling of gene effects from regulators to programs to traits: integration of genetic associations and Perturb-seq
Mineto Ota, Jeffrey P. Spence, Tony Zeng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
A human metabolic map of pharmacological perturbations reveals drug modes of action
Laurentz Schuhknecht, Karin Ortmayr, Jürgen Jänes, et al.
Nature Biotechnology (2025)
Closed Access
CellFIE: Integrating Pathway Discovery With Pooled Profiling of Perturbations Uncovers Pathways of Huntington's Disease, Including Genetic Modifiers of Neuronal Development and Morphology
Byunguk Kang, Michael Murphy, Christopher Ng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Cerebellar Pathology in Forensic and Clinical Neuroscience
Azhagu Madhavan Sivalingam, Darshitha D Sureshkumar
Ageing Research Reviews (2025), pp. 102697-102697
Closed Access
LivecellX: A Deep-learning-based, Single-Cell Object-Oriented Framework for Quantitative Analysis in Live-Cell Imaging
Ke Ni, Geum Bong Yu, Zhiqian Zheng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Phenotypic drug discovery
Sonja Sievers, Herbert Waldmann, Slava Ziegler
Elsevier eBooks (2025)
Closed Access
Cell Painting PLUS: expanding the multiplexing capacity of Cell Painting-based phenotypic profiling using iterative staining-elution cycles
Elena von Coburg, Marlene Wedler, José M. Muiño, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Artificial Intelligence-based Morphological Profiling for Drug Discovery: Advancing Towards 4D Phenotypic Profiling
Margreet R. de Vries, Lucas Dent, Hugh Sparks, et al.
Royal Society of Chemistry eBooks (2025), pp. 209-234
Closed Access
Morphological Profiling in 2D High Content Screening Assays – Case Studies and Applications
Rebecca E. Graham
Royal Society of Chemistry eBooks (2025), pp. 125-146
Closed Access
Reversing pathological cell states: the road less travelled can extend the therapeutic horizon
Boris Ν. Kholodenko, Walter Kölch, Oleksii S. Rukhlenko
Trends in Cell Biology (2023) Vol. 33, Iss. 11, pp. 913-923
Open Access | Times Cited: 10
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells
Sean M. Engels, Pratik Kamat, G. Stavros Pafilis, et al.
PNAS Nexus (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 10
High-content microscopy reveals a morphological signature of bortezomib resistance
Megan E. Kelley, Adi Y. Berman, David R. Stirling, et al.
eLife (2023) Vol. 12
Open Access | Times Cited: 9

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