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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples
Jutte J.C. de Vries, Julianne R. Brown, Nicole Fischer, et al.
Journal of Clinical Virology (2021) Vol. 141, pp. 104908-104908
Open Access | Times Cited: 50

Showing 26-50 of 50 citing articles:

The effects of sequencing strategies on Metagenomic pathogen detection using bronchoalveolar lavage fluid samples
Ziyang Li, Zhe Guo, Weimin Wu, et al.
Heliyon (2024) Vol. 10, Iss. 13, pp. e33429-e33429
Open Access | Times Cited: 2
Detection of enterovirus RNA in pancreas and lymphoid tissues of organ donors with type 1 diabetes
Jutta E. Laiho, Sami Oikarinen, Sofia Morfopoulou, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data
Martin Bosilj, Alen Suljič, Samo Zakotnik, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 2
Development and Validation of a Bioinformatic Workflow for the Rapid Detection of Viruses in Biosecurity
David W. Waite, Lia W. Liefting, C. Delmiglio, et al.
Viruses (2022) Vol. 14, Iss. 10, pp. 2163-2163
Open Access | Times Cited: 10
Longitudinal Monitoring of DNA Viral Loads in Transplant Patients Using Quantitative Metagenomic Next-Generation Sequencing
Ellen C. Carbo, Anne Russcher, Margriet E. M. Kraakman, et al.
Pathogens (2022) Vol. 11, Iss. 2, pp. 236-236
Open Access | Times Cited: 10
Evaluation of the contribution of shotgun metagenomics in the microbiological diagnosis of liver abscesses
Hadrien Kimseng, G. Rossi, Maxime Danjean, et al.
Journal of Infection (2023) Vol. 87, Iss. 5, pp. 365-372
Closed Access | Times Cited: 5
Performance of Five Metagenomic Classifiers for Virus Pathogen Detection Using Respiratory Samples from a Clinical Cohort
Ellen C. Carbo, Igor A. Sidorov, Anneloes van Rijn-Klink, et al.
Pathogens (2022) Vol. 11, Iss. 3, pp. 340-340
Open Access | Times Cited: 8
UltraSEQ, a Universal Bioinformatic Platform for Information-Based Clinical Metagenomics and Beyond
Bryan T. Gemler, Chiranjit Mukherjee, Carrie A. Howland, et al.
Microbiology Spectrum (2023) Vol. 11, Iss. 3
Open Access | Times Cited: 4
Comparison of the performance of two targeted metagenomic virus capture probe-based methods using synthetic viral sequences and clinical samples
Kees Mourik, Igor A. Sidorov, Ellen C. Carbo, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Metagenomic Analysis of Respiratory RNA Virome of Children with and without Severe Acute Respiratory Infection from the Free State, South Africa during COVID-19 Pandemic Reveals Higher Diversity and Abundance in Summer Compared with Winter Period
Ayodeji Ogunbayo, Milton T. Mogotsi, Hlengiwe Sondlane, et al.
Viruses (2022) Vol. 14, Iss. 11, pp. 2516-2516
Open Access | Times Cited: 7
Virus sequencing performance during the SARS-CoV-2 pandemic: a retrospective analysis of data from multiple rounds of external quality assessment in Austria
Jeremy V. Camp, Elisabeth Puchhammer‐Stöckl, Stephan W. Aberle, et al.
Frontiers in Molecular Biosciences (2024) Vol. 11
Open Access | Times Cited: 1
AI-enabled pipeline for virus detection, validation, and SNP discovery from next-generation sequencing data
Abozar Ghorbani, Mahsa Rostami, Pietro Hiram Guzzi
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 1
Translating metagenomics into clinical practice of complex paediatric neurological presentations
Justin Penner, Jane Hassell, Julianne R. Brown, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
We All Know Standardization Is Key, But How Do We Get There with Clinical Metagenomics?
Erin H. Graf
Clinical Chemistry (2023) Vol. 69, Iss. 9, pp. 948-950
Closed Access | Times Cited: 1
Multicenter benchmarking of short and long read wet lab protocols for clinical viral metagenomics
F. Xavier López‐Labrador, Michael Huber, Igor A. Sidorov, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
AI-Enabled Pipeline for Virus Detection, Validation, and SNP Discovery from Next- Generation Sequencing Data
Abozar Ghorbani, Mahsa Rostami, Pietro Hiram Guzzi
Research Square (Research Square) (2024)
Open Access
Optimizing next-generation sequencing efficiency in clinical settings: analysis of read length impact on cost and performance
Pedro Milet Meirelles, P. A. Viana, Diogo Tschoeke, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access
Lymphadenopathy in systemic lupus erythematosus: no microbial trigger found by shotgun metagenomics in a retrospective study on 38 patients
Matthias Papo, Pierre Cappy, Alexandre Degachi, et al.
Lara D. Veeken (2024)
Closed Access
Accessible viral metagenomics for public health and clinical domains with Jovian
Dennis Schmitz, Florian Zwagemaker, Sam Nooij, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access
Performance of five metagenomic classifiers for virus pathogen detection using respiratory samples from a clinical cohort
Ellen C. Carbo, Igor A. Sidorov, Anneloes L. van Rijn-Klink, et al.
medRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 2
Women in the European Virus Bioinformatics Center
Franziska Hufsky, Ana Abecasis, Patricia Agudelo‐Romero, et al.
Viruses (2022) Vol. 14, Iss. 7, pp. 1522-1522
Open Access | Times Cited: 2
Indistinguishable monocyte pathway activation in adeno-associated virus positive and negative paediatric liver explants
Ruben H. de Kleine, Ellen C. Carbo, Simon P. Jochems, et al.
Research Square (Research Square) (2023)
Open Access
Comparasion of Microbiome Composition in Acne Vulgaris Using Metagenomic Shotgun and 16s Rrna
Zahra Zahra, Linda Erlina
Contagion Scientific Periodical Journal of Public Health and Coastal Health (2023) Vol. 5, Iss. 3, pp. 993-993
Open Access
UltraSEQ: a universal bioinformatic platform for information-based clinical metagenomics and beyond
Bryan T. Gemler, Chiranjit Mukherjee, Carrie A. Howland, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
Enhanced Viral Metagenomics with Lazypipe 2
Ilya Plyusnin, Olli Vapalahti, Tarja Sironen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
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