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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

mRNA quantification using single-molecule FISH in Drosophila embryos
Tatjana Trcek, Timothée Lionnet, Hari Shroff, et al.
Nature Protocols (2016) Vol. 12, Iss. 7, pp. 1326-1348
Open Access | Times Cited: 116

Showing 26-50 of 116 citing articles:

Perturbations in 3D genome organization can promote acquired drug resistance
Anna G. Manjón, Stefano Giustino Manzo, Stefan Prekovic, et al.
Cell Reports (2023) Vol. 42, Iss. 10, pp. 113124-113124
Open Access | Times Cited: 11
Chromosome Structure I: Loop extrusion or boundary:boundary pairing?
Xinyang Bing, Wenfan Ke, Miki Fujioka, et al.
(2024)
Open Access | Times Cited: 4
Stem-loop and circle-loop TADs generated by directional pairing of boundary elements have distinct physical and regulatory properties
Wenfan Ke, Miki Fujioka, Paul Schedl, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 4
Regulation of Notch output dynamics via specific E(spl)-HLH factors during bristle patterning in Drosophila
Lydie Couturier, Khalil Mazouni, Francis Corson, et al.
Nature Communications (2019) Vol. 10, Iss. 1
Open Access | Times Cited: 35
Sequential Regulation of Maternal mRNAs through a Conserved cis-Acting Element in Their 3′ UTRs
Pooja Flora, Siu Wah Wong-Deyrup, Elliot T. Martin, et al.
Cell Reports (2018) Vol. 25, Iss. 13, pp. 3828-3843.e9
Open Access | Times Cited: 33
Direct and simultaneous observation of transcription and chromosome architecture in single cells with Hi-M
Andrés M. Cardozo Gizzi, Sergio Espínola, Julian Gurgo, et al.
Nature Protocols (2020) Vol. 15, Iss. 3, pp. 840-876
Open Access | Times Cited: 29
Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos
Anna C. Kögler, Yacine Kherdjemil, Katharina Bender, et al.
Developmental Cell (2021) Vol. 56, Iss. 16, pp. 2348-2363.e8
Open Access | Times Cited: 27
Dynamics of hunchback translation in real-time and at single-mRNA resolution in the Drosophila embryo
Daisy J. Vinter, Caroline Hoppe, Thomas G. Minchington, et al.
Development (2021) Vol. 148, Iss. 18
Open Access | Times Cited: 24
Integration of Computational Analysis and Spatial Transcriptomics in Single-Cell Studies
Ran Wang, Guangdun Peng, Patrick Tam, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 21, Iss. 1, pp. 13-23
Open Access | Times Cited: 18
Proteins rather than mRNAs regulate nucleation and persistence of Oskar germ granules in Drosophila
Harrison A. Curnutte, Xinyue Lan, Manuel Sargen, et al.
Cell Reports (2023) Vol. 42, Iss. 7, pp. 112723-112723
Open Access | Times Cited: 11
Decoding the blueprints of embryo development with single-cell and spatial omics
Chang Liu, Xuerong Li, Qinan Hu, et al.
Seminars in Cell and Developmental Biology (2025) Vol. 167, pp. 22-39
Open Access
A conserved role for centriolar satellites in translation of centrosomal and ciliary proteins
Claudia Pachinger, Jeroen Dobbelaere, Cornelia Rumpf-Kienzl, et al.
The Journal of Cell Biology (2025) Vol. 224, Iss. 8
Open Access
Cholesterol signaling in single cells: lessons from STAR and sm-FISH
Colin R. Jefcoate, Jeong Yong Lee
Journal of Molecular Endocrinology (2018) Vol. 60, Iss. 4, pp. R213-R235
Open Access | Times Cited: 29
CRISPR-Sunspot: Imaging of endogenous low-abundance RNA at the single-molecule level in live cells
Ninghe Sun, Danyang Chen, Lu-Peng Ye, et al.
Theranostics (2020) Vol. 10, Iss. 24, pp. 10993-11012
Open Access | Times Cited: 26
Encoding Method of Single-cell Spatial Transcriptomics Sequencing
Ying Zhou, Erteng Jia, Min Pan, et al.
International Journal of Biological Sciences (2020) Vol. 16, Iss. 14, pp. 2663-2674
Open Access | Times Cited: 25
Stem cell heterogeneity, plasticity, and regulation
Ziyang Cui, Hope Wei, Colin R. Goding, et al.
Life Sciences (2023) Vol. 334, pp. 122240-122240
Closed Access | Times Cited: 9
Single-mRNA detection in living S. cerevisiae using a re-engineered MS2 system
Evelina Tutucci, María Vera, Robert H. Singer
Nature Protocols (2018) Vol. 13, Iss. 10, pp. 2268-2296
Closed Access | Times Cited: 25
Recent progress in live cell mRNA/microRNA imaging probes based on smart and versatile nanomaterials
Dinggeng He, Ka-Wang Wong, Zhenzhen Dong, et al.
Journal of Materials Chemistry B (2018) Vol. 6, Iss. 47, pp. 7773-7793
Closed Access | Times Cited: 25
Nucleus size and DNA accessibility are linked to the regulation of paraspeckle formation in cellular differentiation
Markus Grosch, Sebastian Ittermann, Ejona Rusha, et al.
BMC Biology (2020) Vol. 18, Iss. 1
Open Access | Times Cited: 22
L(3)mbt and the LINT complex safeguard cellular identity in the Drosophila ovary
Rémi-Xavier Coux, Felipe Karam Teixeira, Ruth Lehmann
Development (2018) Vol. 145, Iss. 7
Open Access | Times Cited: 20
Dynamics of Spaetzle morphogen shuttling in the Drosophila embryo shapes gastrulation patterning
Neta Rahimi, Inna Averbukh, Shari Carmon, et al.
Development (2019) Vol. 146, Iss. 21
Open Access | Times Cited: 19
Single molecule mRNA fluorescent in situ hybridization combined with immunofluorescence in S. cerevisiae: Dataset and quantification
Anna Maekiniemi, Robert H. Singer, Evelina Tutucci
Data in Brief (2020) Vol. 30, pp. 105511-105511
Open Access | Times Cited: 18
Demystifying biotrophs: FISHing for mRNAs to decipher plant and algal pathogen–host interaction at the single cell level
Julia Badstöber, Claire M. M. Gachon, Jutta Ludwig‐Müller, et al.
Scientific Reports (2020) Vol. 10, Iss. 1
Open Access | Times Cited: 18
Spatial transcriptomics: new dimension of understanding biological complexity
Zhuxia Li, Guangdun Peng
Biophysics Reports (2022) Vol. 8, Iss. 3, pp. 119-135
Open Access | Times Cited: 11
Centriolar satellites are sites of translation of centrosomal and ciliary proteins
Claudia Pachinger, Jeroen Dobbelaere, Cornelia Rumpf-Kienzl, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2

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