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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures
Xueyi Dong, Mei R. M. Du, Quentin Gouil, et al.
Nature Methods (2023) Vol. 20, Iss. 11, pp. 1810-1821
Open Access | Times Cited: 49

Showing 26-50 of 49 citing articles:

Nanopore guided annotation of transcriptome architectures
Jonathan S. Abebe, Yasmine Alwie, Erik Fuhrmann, et al.
mSystems (2024) Vol. 9, Iss. 7
Open Access | Times Cited: 2
Characterization and implementation of the MarathonRT template-switching reaction to expand the capabilities of RNA-Seq
Litao Guo, Anastasiya Grinko, Sara Olson, et al.
RNA (2024) Vol. 30, Iss. 11, pp. 1495-1512
Open Access | Times Cited: 2
SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark
Jorge Mestre-Tomás, Tianyuan Liu, Francisco J. Pardo-Palacios, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 6
Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage
Emma F. Jones, Timothy C. Howton, Victoria L. Flanary, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Transcriptome Responses to Different Salinity Conditions in Litoditis marina, Revealed by Long-Read Sequencing
Pengchi Zhang, Beining Xue, Hanwen Yang, et al.
Genes (2024) Vol. 15, Iss. 3, pp. 317-317
Open Access | Times Cited: 1
Nanopore Guided Annotation of Transcriptome Architectures
Jonathan S. Abebe, Yasmine Alwie, Erik Fuhrmann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner
Hyun Joo Ji, Mihaela Pertea
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Performance of somatic structural variant calling in lung cancer using Oxford Nanopore sequencing technology
Lingchen Liu, Jia Zhang, Scott Wood, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 1
Repeated horizontal acquisition of lagriamide-producing symbionts in Lagriinae beetles
Siddharth Uppal, Samantha C. Waterworth, Alina Nick, et al.
The ISME Journal (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 1
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification
Liang Zong, Yabing Zhu, Yuan Jiang, et al.
RNA Biology (2024) Vol. 21, Iss. 1, pp. 122-131
Open Access | Times Cited: 1
SUsPECT: a pipeline for variant effect prediction based on custom long-read transcriptomes for improved clinical variant annotation
Renee Salz, Nuno Saraiva-Agostinho, Emil E. Vorsteveld, et al.
BMC Genomics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 3
Restrander: rapid orientation and artefact removal for long-read cDNA data
Jakob Schuster, Matthew E. Ritchie, Quentin Gouil
NAR Genomics and Bioinformatics (2023) Vol. 5, Iss. 4
Open Access | Times Cited: 2
Repeated horizontal acquisition of lagriamide-producing symbionts in Lagriinae beetles
Siddharth Uppal, Samantha C. Waterworth, Alina Nick, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Benchmarking transcriptional deconvolution methods for estimating tissue- and cell type-specific extracellular vesicle abundances
Jannik Hjortshøj Larsen, I. Jensen, Per Svenningsen
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Innovative Low-cost Probe Generation Empowers Targeted Long-read RNA Sequencing
Gang Fang
Genomics Proteomics & Bioinformatics (2024) Vol. 22, Iss. 6
Open Access
Systematic benchmarking of omics computational tools
Sanjay Kumar, Manjusa Singh, Rajesh Kumar Sharma, et al.
Elsevier eBooks (2024), pp. 55-83
Closed Access
Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage
Emma F. Jones, Timothy C. Howton, Victoria L. Flanary, et al.
Molecular Brain (2024) Vol. 17, Iss. 1
Open Access
HyDRA: a pipeline for integrating long- and short-read RNAseq data for custom transcriptome assembly
Isabela Almeida, Xue Lu, Stacey L. Edwards, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
Benchmarking transcriptome deconvolution methods for estimating tissue‐ and cell‐type‐specific extracellular vesicle abundances
Jannik Hjortshøj Larsen, I. Jensen, Per Svenningsen
Journal of Extracellular Vesicles (2024) Vol. 13, Iss. 9
Open Access
Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline
Camille Aucouturier, Nicolas Soirat, Laurent Castéra, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access
Systematic review and meta-analysis of bulk RNAseq studies in human Alzheimer's disease brain tissue
Bernardo Aguzzoli Heberle, Kevin Fox, Lucas Lobraico Libermann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
RNApysoforms: Fast rendering interactive visualization of RNA isoform structure and expression in Python
Bernardo Aguzzoli Heberle, Madeline L. Page, Emil K. Gustavsson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
L-RAPiT: A Cloud-Based Computing Pipeline for the Analysis of Long-Read RNA Sequencing Data
Theodore M. Nelson, Sankar Ghosh, Thomas S. Postler
International Journal of Molecular Sciences (2022) Vol. 23, Iss. 24, pp. 15851-15851
Open Access | Times Cited: 2
SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark
Jorge Mestre-Tomás, Tianyuan Liu, Francisco J. Pardo-Palacios, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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