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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Jointly defining cell types from multiple single-cell datasets using LIGER
Jialin Liu, Chao Gao, Joshua Sodicoff, et al.
Nature Protocols (2020) Vol. 15, Iss. 11, pp. 3632-3662
Open Access | Times Cited: 144

Showing 26-50 of 144 citing articles:

Deep Learning in Single-cell Analysis
Dylan Molho, Jiayuan Ding, Wenzhuo Tang, et al.
ACM Transactions on Intelligent Systems and Technology (2024) Vol. 15, Iss. 3, pp. 1-62
Open Access | Times Cited: 7
Advances and applications in single-cell and spatial genomics
Jingjing Wang, Fang Ye, Haoxi Chai, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 7
A systematic overview of single-cell transcriptomics databases, their use cases, and limitations
Mahnoor N. Gondal -, Syed Hamad Hassan Shah, Arul M. Chinnaiyan, et al.
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 6
SMILE: mutual information learning for integration of single-cell omics data
Yang Xu, Priyojit Das, Rachel Patton McCord
Bioinformatics (2021) Vol. 38, Iss. 2, pp. 476-486
Open Access | Times Cited: 37
Intricacies of single-cell multi-omics data integration
Pia Rautenstrauch, Anna Hendrika Cornelia Vlot, Sepideh Saran, et al.
Trends in Genetics (2021) Vol. 38, Iss. 2, pp. 128-139
Closed Access | Times Cited: 35
Building the mega single-cell transcriptome ocular meta-atlas
Vinay Swamy, Temesgen Fufa, Robert B. Hufnagel, et al.
GigaScience (2021) Vol. 10, Iss. 10
Open Access | Times Cited: 35
Single-cell analysis of human basal cell carcinoma reveals novel regulators of tumor growth and the tumor microenvironment
Christian F. Guerrero‐Juarez, Gun Ho Lee, Yingzi Liu, et al.
Science Advances (2022) Vol. 8, Iss. 23
Open Access | Times Cited: 28
Multi-omics and pharmacological characterization of patient-derived glioma cell lines
Min Wu, Tingting Wang, Nan Ji, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Recovery of biological signals lost in single-cell batch integration with CellANOVA
Zhaojun Zhang, Divij Mathew, Tristan Lim, et al.
Nature Biotechnology (2024)
Closed Access | Times Cited: 5
Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data
Shih‐Kai Chu, Shilin Zhao, Yu Shyr, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 2
Open Access | Times Cited: 30
Single-Cell Transcriptomic Analysis Reveals Developmental Relationships and Specific Markers of Mouse Periodontium Cellular Subsets
Mizuki Nagata, Angel Ka Yan Chu, Noriaki Ono, et al.
Frontiers in Dental Medicine (2021) Vol. 2
Open Access | Times Cited: 28
Learning deep features and topological structure of cells for clustering of scRNA-sequencing data
Haiyue Wang, Xiaoke Ma
Briefings in Bioinformatics (2022) Vol. 23, Iss. 3
Closed Access | Times Cited: 19
Integration of Pan-Cancer Cell Line and Single-Cell Transcriptomic Profiles Enables Inference of Therapeutic Vulnerabilities in Heterogeneous Tumors
Weijie Zhang, Danielle Maeser, Adam M. Lee, et al.
Cancer Research (2024) Vol. 84, Iss. 12, pp. 2021-2033
Open Access | Times Cited: 4
CSI-GEP: A GPU-based unsupervised machine learning approach for recovering gene expression programs in atlas-scale single-cell RNA-seq data
Xueying Liu, Richard H. Chapple, D. W. Bennett, et al.
Cell Genomics (2025) Vol. 5, Iss. 1, pp. 100739-100739
Open Access
Multi-Omics Integration in Nephrology: Advances, Challenges, and Future Directions
Afaf Saliba, Yuheng Du, Tianqing Feng, et al.
Seminars in Nephrology (2025), pp. 151584-151584
Open Access
FactVAE: a factorized variational autoencoder for single-cell multi-omics data integration analysis
Linjie Wang, Huixia Zhang, Bo Yi, et al.
Briefings in Bioinformatics (2025) Vol. 26, Iss. 2
Open Access
Single Cell and Spatial Omics and Applications in Toxicology
David A. Gallegos, Dakota R. Robarts, David S. Umbaugh
Elsevier eBooks (2025)
Closed Access
How many markers are needed to robustly determine a cell's type?
Stephan Fischer, Jesse Gillis
iScience (2021) Vol. 24, Iss. 11, pp. 103292-103292
Open Access | Times Cited: 24
Diverse stem cells for periodontal tissue formation and regeneration
Mizuki Nagata, Jeryl D. English, Noriaki Ono, et al.
genesis (2022) Vol. 60, Iss. 8-9
Open Access | Times Cited: 17
sciCAN: single-cell chromatin accessibility and gene expression data integration via cycle-consistent adversarial network
Yang Xu, Edmon Begoli, Rachel Patton McCord
npj Systems Biology and Applications (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 17
Learning Consistency and Specificity of Cells From Single-Cell Multi-Omic Data
Haiyue Wang, Zaiyi Liu, Xiaoke Ma
IEEE Journal of Biomedical and Health Informatics (2024) Vol. 28, Iss. 5, pp. 3134-3145
Closed Access | Times Cited: 3
Conservation, alteration, and redistribution of mammalian striatal interneurons
Emily K. Corrigan, Michael DeBerardine, Aunoy Poddar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms
Hongyu Zheng, Hirak Sarkar, Benjamin J. Raphael
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Single Cell Proteomics Reveals Novel Cell Phenotypes in Marfan Mouse Aneurysm
Louis Saddic, Giselle Kaneda, Amanda Momenzadeh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Single-Cell Multi-Omics: Insights into Therapeutic Innovations to Advance Treatment in Cancer
Ai-xing Guan, Camelia Quek
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 6, pp. 2447-2447
Open Access

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