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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Deciphering tissue structure and function using spatial transcriptomics
Benjamin L. Walker, Zixuan Cang, Honglei Ren, et al.
Communications Biology (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 72

Showing 26-50 of 72 citing articles:

Spatially-structured inflammatory response in the presence of a uniform stimulus
Elizabeth R. Jerison, Nicolas Romeo, Stephen R. Quake
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Benchmarking the translational potential of spatial gene expression prediction from histology
Chuhan Wang, Adam S. Chan, Xiaohang Fu, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
CeiTEA: Adaptive Hierarchy of Single Cells with Topological Entropy
Bowen Tan, Shiying Li, Mengbo Wang, et al.
Advanced Science (2025)
Open Access
NeST: nested hierarchical structure identification in spatial transcriptomic data
Benjamin L. Walker, Qing Nie
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 10
MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Seyednami Niyakan, Jianting Sheng, Yuliang Cao, et al.
Patterns (2024) Vol. 5, Iss. 5, pp. 100986-100986
Open Access | Times Cited: 2
Precise detection of cell-type-specific domains in spatial transcriptomics
Zhihan Ruan, Weijun Zhou, Zhihong Liu, et al.
Cell Reports Methods (2024) Vol. 4, Iss. 8, pp. 100841-100841
Open Access | Times Cited: 2
scDOT: optimal transport for mapping senescent cells in spatial transcriptomics
Nam D. Nguyen, Lorena Rosas, Timur O. Khaliullin, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Single-cell spatial explorer: easy exploration of spatial and multimodal transcriptomics
Frédéric Pont, Juan‐Pablo Cerapio, Pauline Gravelle, et al.
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 6
SMURF: embedding single-cell RNA-seq data with matrix factorization preserving self-consistency
Juhua Pu, Bingchen Wang, Xingwu Liu, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 2
Open Access | Times Cited: 6
An overview of the detection of bovine respiratory disease complex pathogens using immunohistochemistry: emerging trends and opportunities
Gebremeskel Mamu Werid, Darren S. Miller, Farhid Hemmatzadeh, et al.
Journal of Veterinary Diagnostic Investigation (2023) Vol. 36, Iss. 1, pp. 12-23
Open Access | Times Cited: 6
The progressive application of single-cell RNA sequencing technology in cardiovascular diseases
Ke Yang, Jian-Yuan Huang, Ping Zhou, et al.
Biomedicine & Pharmacotherapy (2022) Vol. 154, pp. 113604-113604
Open Access | Times Cited: 9
Spatial transcriptomics in human biomedical research and clinical application
Weining Hu, Yin Zhang, Junpu Mei, et al.
Current Medicine (2023) Vol. 2, Iss. 1
Open Access | Times Cited: 5
Spatial protein and RNA analysis on the same tissue section using MICS technology
E. Caporaso Neil, Dongju Park, Rebecca C. Hennessey, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Through the looking glass: attempting to predict future opportunities and challenges in experimental biology
Kathleen M. Gilmour, Monica A. Daley, Stuart Egginton, et al.
Journal of Experimental Biology (2023) Vol. 226, Iss. 24
Open Access | Times Cited: 5
Modeling and inference of spatial intercellular communications and multilayer signaling regulations using stMLnet
Jinyu Cheng, Lulu Yan, Qing Nie, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 8
Insights into Neurodegeneration in Parkinson's Disease from Single‐Cell and Spatial Genomics
Tushar Kamath, Evan Z. Macosko
Movement Disorders (2023) Vol. 38, Iss. 4, pp. 518-525
Open Access | Times Cited: 4
Spatiotemporal single-cell tracking analysis in 3D tissues to reveal heterogeneous cellular response to mechanical stimuli
Keitaro Kasahara, Jumpei Muramatsu, Yuta Kurashina, et al.
Science Advances (2023) Vol. 9, Iss. 41
Open Access | Times Cited: 4
Benchmarking the translational potential of spatial gene expression prediction from histology
Adam S. Chan, Chuhan Wang, Xiaohang Fu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Adjustment of scRNA-seq data to improve cell-type decomposition of spatial transcriptomics
Lanying Wang, Yuxuan Hu, Lin Gao
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 1
ST-GEARS: Advancing 3D downstream research through accurate spatial information recovery
Tianyi Xia, Luni Hu, Lulu Zuo, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 1
Addressing the mean-variance relationship in spatially resolved transcriptomics data with spoon
Kinnary H Shah, Boyi Guo, Stephanie C. Hicks
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
HistoSPACE: Histology-Inspired Spatial Transcriptome Prediction And Characterization Engine
Shivam Kumar, Samrat Chatterjee
Methods (2024) Vol. 232, pp. 107-114
Open Access | Times Cited: 1
Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysis
Demeter Túrós, Jelica Vasiljević, Kerstin Hahn, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 1
Connectome architecture shapes large-scale cortical alterations in schizophrenia: a worldwide ENIGMA study
Foivos Georgiadis, Sara Larivière, David C. Glahn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
A computational pipeline for spatial mechano-transcriptomics
Adrien Hallou, Ruiyang He, Benjamin D. Simons, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3

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