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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Scalable molecular dynamics on CPU and GPU architectures with NAMD
J. C. Phillips, David J. Hardy, Julio D. C. Maia, et al.
The Journal of Chemical Physics (2020) Vol. 153, Iss. 4
Open Access | Times Cited: 2398

Showing 26-50 of 2398 citing articles:

Analysis of Protein Folding Simulation with Moving Root Mean Square Deviation
Yutaka Maruyama, Ryo Igarashi, Yoshitaka Ushiku, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 5, pp. 1529-1541
Open Access | Times Cited: 66
NNP/MM: Accelerating Molecular Dynamics Simulations with Machine Learning Potentials and Molecular Mechanics
Raimondas Galvelis, Alejandro Varela‐Rial, Stefan Doerr, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 18, pp. 5701-5708
Open Access | Times Cited: 56
A Gram-negative-selective antibiotic that spares the gut microbiome
Kristen A. Muñoz, Rebecca J. Ulrich, Archit Vasan, et al.
Nature (2024) Vol. 630, Iss. 8016, pp. 429-436
Closed Access | Times Cited: 56
Structural basis of mitochondrial protein import by the TIM23 complex
Sue Sim, Yuanyuan Chen, Diane L. Lynch, et al.
Nature (2023) Vol. 621, Iss. 7979, pp. 620-626
Open Access | Times Cited: 55
TMEM63 proteins function as monomeric high-threshold mechanosensitive ion channels
Zheng Wang, Shaun Rawson, Zhangfei Shen, et al.
Neuron (2023) Vol. 111, Iss. 20, pp. 3195-3210.e7
Closed Access | Times Cited: 53
Machine-learning atomic simulation for heterogeneous catalysis
Dongxiao Chen, Cheng Shang, Zhi‐Pan Liu
npj Computational Materials (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 52
Molecular docking in organic, inorganic, and hybrid systems: a tutorial review
Madhuchhanda Mohanty, Priti S. Mohanty
Monatshefte für Chemie - Chemical Monthly (2023) Vol. 154, Iss. 7, pp. 683-707
Open Access | Times Cited: 51
Pragmatic Coarse-Graining of Proteins: Models and Applications
Luís Borges-Araújo, Ilias Patmanidis, Akhil Pratap Singh, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 20, pp. 7112-7135
Open Access | Times Cited: 46
Architecture of chloroplast TOC–TIC translocon supercomplex
Hao Liu, Anjie Li, Jean‐David Rochaix, et al.
Nature (2023) Vol. 615, Iss. 7951, pp. 349-357
Open Access | Times Cited: 43
Lipid nanodisc scaffold and size alter the structure of a pentameric ligand-gated ion channel
Vikram L. Dalal, Mark J. Arcario, John T. Petroff, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 34
Structure of alpha-synuclein fibrils derived from human Lewy body dementia tissue
Dhruva Dhavale, Alexander M. Barclay, Collin G. Borcik, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 28
Revolutionizing Drug Discovery: A Comprehensive Review of AI Applications
Rushikesh Dhudum, Ankit Ganeshpurkar, Atmaram Pawar
Drugs and Drug Candidates (2024) Vol. 3, Iss. 1, pp. 148-171
Open Access | Times Cited: 25
CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed
Wonmuk Hwang, Steven L. Austin, Arnaud Blondel, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 41, pp. 9976-10042
Open Access | Times Cited: 22
GōMartini 3: From large conformational changes in proteins to environmental bias corrections
Paulo C. T. Souza, Luís Borges-Araújo, Chris Brasnett, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 20
Volatile communication in plants relies on a KAI2-mediated signaling pathway
Shannon A. Stirling, Angelica M. Guercio, Ryan M. Patrick, et al.
Science (2024) Vol. 383, Iss. 6689, pp. 1318-1325
Open Access | Times Cited: 18
Structural basis for the oligomerization-facilitated NLRP3 activation
Xiaodi Yu, Rosalie Matico, Robyn Miller, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 17
Living plastics from plasticizer-assisted thermal molding of silk protein
Yushu Wang, Junqi Wu, Emily J. Hartzell, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 4
Computational biology and artificial intelligence in mRNA vaccine design for cancer immunotherapy
Saber İmani, Xiaoyan Li, Keyi Chen, et al.
Frontiers in Cellular and Infection Microbiology (2025) Vol. 14
Open Access | Times Cited: 4
Mg2+-dependent mechanism of environmental versatility in a multidrug efflux pump
Benjamin Russell Lewis, Muhammad Ramiz Uddin, Katie M. Kuo, et al.
Structure (2025)
Open Access | Times Cited: 2
High Throughput Mutational Scanning of a Protein via Alchemistry on a High‐Performance Computing Resource
Tandac F. Guclu, Busra Tayhan, Ebru Çetin, et al.
Concurrency and Computation Practice and Experience (2025) Vol. 37, Iss. 3
Open Access | Times Cited: 2
Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss‐of‐function and gain‐of‐function mutants
Liang Xu, Hyunbum Jang, Ruth Nussinov
Protein Science (2025) Vol. 34, Iss. 2
Open Access | Times Cited: 2
Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories
Marcelo C. R. Melo, Rafael C. Bernardi, César de la Fuente‐Núñez, et al.
The Journal of Chemical Physics (2020) Vol. 153, Iss. 13
Open Access | Times Cited: 124
Multi-spectroscopic investigation, molecular docking and molecular dynamic simulation of competitive interactions between flavonoids (quercetin and rutin) and sorafenib for binding to human serum albumin
Nawaf A. Alsaif, Tanveer A. Wani, Ahmed H. Bakheit, et al.
International Journal of Biological Macromolecules (2020) Vol. 165, pp. 2451-2461
Closed Access | Times Cited: 108
ReaxFF Molecular Dynamics Simulations of Thermal Reactivity of Various Fuels in Pyrolysis and Combustion
Xiaoxia Li, Mo Zheng, Chunxing Ren, et al.
Energy & Fuels (2021) Vol. 35, Iss. 15, pp. 11707-11739
Closed Access | Times Cited: 100
Structural basis of omega-3 fatty acid transport across the blood–brain barrier
Rosemary J. Cater, Geok Lin Chua, Satchal K. Erramilli, et al.
Nature (2021) Vol. 595, Iss. 7866, pp. 315-319
Open Access | Times Cited: 96

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