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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Improved regulatory element prediction based on tissue-specific local epigenomic signatures
Yupeng He, David U. Gorkin, Diane E. Dickel, et al.
Proceedings of the National Academy of Sciences (2017) Vol. 114, Iss. 9
Open Access | Times Cited: 83

Showing 26-50 of 83 citing articles:

Mitotic inheritance of DNA methylation: more than just copy and paste
Ming Xuan, Bing Zhu, Yingfeng Li
Journal of genetics and genomics/Journal of Genetics and Genomics (2021) Vol. 48, Iss. 1, pp. 1-13
Closed Access | Times Cited: 24
A survey of recently emerged genome-wide computational enhancer predictor tools
Leonard Whye Kit Lim, Hung Hui Chung, Yee Ling Chong, et al.
Computational Biology and Chemistry (2018) Vol. 74, pp. 132-141
Open Access | Times Cited: 32
Sequence based prediction of enhancer regions from DNA random walk
Anand Pratap Singh, Sarthak Mishra, Suraiya Jabin
Scientific Reports (2018) Vol. 8, Iss. 1
Open Access | Times Cited: 32
A neural network based model effectively predicts enhancers from clinical ATAC-seq samples
Asa Thibodeau, Aslı Uyar, Shubham Khetan, et al.
Scientific Reports (2018) Vol. 8, Iss. 1
Open Access | Times Cited: 31
Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
Fangming Xie, Ethan J. Armand, Zizhen Yao, et al.
Cell Genomics (2023) Vol. 3, Iss. 7, pp. 100342-100342
Open Access | Times Cited: 9
A pitfall for machine learning methods aiming to predict across cell types
Jacob Schreiber, Ritambhara Singh, Jeffrey A. Bilmes, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 23
Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus
Yupeng He, Manoj Hariharan, David U. Gorkin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2017)
Open Access | Times Cited: 24
Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules in humans and mice
Pengyu Ni, Joshua Moe, Zhengchang Su
BMC Biology (2022) Vol. 20, Iss. 1
Open Access | Times Cited: 12
Functional impacts of non-coding RNA processing on enhancer activity and target gene expression
Evgenia Ntini, Annalisa Marsico
Journal of Molecular Cell Biology (2019) Vol. 11, Iss. 10, pp. 868-879
Open Access | Times Cited: 18
DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution
Hanqing Liu, Jingtian Zhou, Wei Tian, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 18
Pig-eRNAdb: a comprehensive enhancer and eRNA dataset of pigs
Yifei Wang, Weiwei Jin, Xiangchun Pan, et al.
Scientific Data (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 2
Predicting enhancers in mammalian genomes using supervised hidden Markov models
Tobias Zehnder, Philipp Benner, Martin Vingron
BMC Bioinformatics (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 16
A comprehensive review of computational prediction of genome-wide features
Tianlei Xu, Xiaoqi Zheng, Ben Li, et al.
Briefings in Bioinformatics (2018) Vol. 21, Iss. 1, pp. 120-134
Open Access | Times Cited: 15
Machine Learning Based Comparative Analysis of Methods for Enhancer Prediction in Genomic Data
Amandeep Kaur, Ajay Pal Singh Chauhan, Ashwani Kumar Aggarwal
(2019), pp. 142-145
Closed Access | Times Cited: 15
CrepHAN: cross-species prediction of enhancers by using hierarchical attention networks
Jianwei Hong, Ruitian Gao, Yang Yang
Bioinformatics (2021) Vol. 37, Iss. 20, pp. 3436-3443
Closed Access | Times Cited: 12
StateHub-StatePaintR: rapid and reproducible chromatin state evaluation for custom genome annotation
Simon G. Coetzee, Zachary Ramjan, Huy Q. Dinh, et al.
F1000Research (2018) Vol. 7, pp. 214-214
Open Access | Times Cited: 12
Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer
Emily Flam, Ludmila Danilova, Dylan Z. Kelley, et al.
Scientific Reports (2019) Vol. 9, Iss. 1
Open Access | Times Cited: 10
How to study enhancers in non-traditional insect models
Yoshinori Tomoyasu, Marc S. Halfon
Journal of Experimental Biology (2020) Vol. 223, Iss. Suppl_1
Open Access | Times Cited: 10
ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation
Ramzan Umarov, Yu Li, Takahiro Arakawa, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 9, pp. e1009376-e1009376
Open Access | Times Cited: 9
Functional Variants Identified Efficiently through an Integrated Transcriptome and Epigenome Analysis
Fanlin Meng, Guo-Hong Yuan, Xiurui Zhu, et al.
Scientific Reports (2018) Vol. 8, Iss. 1
Open Access | Times Cited: 9
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method
Philipp Benner, Martin Vingron
Journal of Computational Biology (2019) Vol. 27, Iss. 4, pp. 442-457
Open Access | Times Cited: 8
The Role of Histone Methylation and Methyltransferases in Gene Regulation
Julia Yue Cui, Zidong Donna Fu, Joseph L. Dempsey
Elsevier eBooks (2018), pp. 31-84
Closed Access | Times Cited: 7
CAMIO: a transgenic CRISPR pipeline to create diverse targeted genome deletions in Drosophila
Hui-Min Chen, Jorge Garcia Marques, Ken Sugino, et al.
Nucleic Acids Research (2020) Vol. 48, Iss. 8, pp. 4344-4356
Open Access | Times Cited: 7
Improved Prediction of Regulatory Element Using Hybrid Abelian Complexity Features with DNA Sequences
Chengchao Wu, Jin Chen, Yunxia Liu, et al.
International Journal of Molecular Sciences (2019) Vol. 20, Iss. 7, pp. 1704-1704
Open Access | Times Cited: 6
Enhancing resolution of natural methylome reprogramming behavior in plants
Robersy Sánchez, Xiaodong Yang, Jose R Barreras, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 5

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