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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0
Claudia Skok Gibbs, Christopher A. Jackson, Giuseppe-Antonio Saldi, et al.
Bioinformatics (2022) Vol. 38, Iss. 9, pp. 2519-2528
Open Access | Times Cited: 49

Showing 26-50 of 49 citing articles:

Augusta: From RNA‐Seq to gene regulatory networks and Boolean models
Jana Musilová, Zdenek Vafek, Bhanwar Lal Puniya, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 783-790
Open Access | Times Cited: 1
Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications
Bingran Shen, Gloria M. Coruzzi, Dennis Shasha
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 1
GeneSPIDER2: large scale GRN simulation and benchmarking with perturbed single-cell data
Mateusz Garbulowski, Thomas Hillerton, Daniel Morgan, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 3
Open Access | Times Cited: 1
Unsupervised construction of gene regulatory network based on single-cell multi-omics data of colorectal cancer
Lingyu Cui, Hongfei Li, Jilong Bian, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 2
Closed Access | Times Cited: 3
EnsInfer: a simple ensemble approach to network inference outperforms any single method
Bingran Shen, Gloria M. Coruzzi, Dennis Shasha
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 3
Robust discovery of gene regulatory networks from single-cell gene expression data by Causal Inference Using Composition of Transactions
Abbas Shojaee, Shao‐shan Carol Huang
Briefings in Bioinformatics (2023) Vol. 24, Iss. 6
Open Access | Times Cited: 3
Coordinated control of neuronal differentiation and wiring by a sustained code of transcription factors
Mehmet Neset Özel, Claudia Skok Gibbs, Isabel Holguera, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 5
Scalable transcriptomics analysis with Dask: applications in data science and machine learning
Marta Moreno, Ricardo Vilaça, Pedro G. Ferreira
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 4
Alveolar epithelial progenitor cells drive lung regeneration via dynamic changes in chromatin topology modulated by lineage-specific Nkx2-1 activity
Andrea Tóth, Paranthaman S. Kannan, John Snowball, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 3
Smart software untangles gene regulation in cells
Jeffrey M. Perkel
Nature (2022) Vol. 609, Iss. 7926, pp. 428-431
Open Access | Times Cited: 3
Integration of single-cell transcriptome and chromatin accessibility and its application on tumor investigation
Chunyuan Yang, Yan Jin, Yuxin Yin
Life Medicine (2024) Vol. 3, Iss. 2
Open Access
Optimizing data integration improves gene regulatory network inference in Arabidopsis thaliana
Océane Cassan, Charles‐Henri Lecellier, Antoine Martin, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access
Exploiting Medical-Expert Knowledge Via a Novel Memetic Algorithm for the Inference of Gene Regulatory Networks
Adrián Segura-Ortiz, José García-Nieto, José F. Aldana‐Montes
Lecture notes in computer science (2024), pp. 3-17
Closed Access
A Graph Informed Framework Empowering Gene Pathway Discovery and Gene Expression-Assisted Disease Classification
Yihao Wang, Yue Wang, Jin Jin
(2024)
Closed Access
Gene Regulatory Network inference based on Modified Adaptive Lasso
Chao Li, Xiaoran Huang, Xiao Luo, et al.
Journal of Bioinformatics and Computational Biology (2024)
Closed Access
Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods
Karamveer Karamveer, Yasin Uzun
Bioinformatics and Biology Insights (2024) Vol. 18
Open Access
Transfer learning and DNA language models enhance transcription factor binding predictions
Ekin Deniz Aksu, Martin Vingron
(2024)
Open Access
Deciphering lineage-relevant gene regulatory networks during endoderm formation by InPheRNo-ChIP
Chen Su, William A. Pastor, Amin Emad
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access
NetREm Network Regression Embeddings re-veal cell-type transcription factor coordination for gene regulation
Saniya Khullar, Xiang Huang, Raghu Ramesh, et al.
Bioinformatics Advances (2024) Vol. 5, Iss. 1
Open Access
DiscoGen: Learning to Discover Gene Regulatory Networks
Nan Rosemary Ke, Sara‐Jane Dunn, Jorg Bornschein, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Stem cells tightly regulate dead cell clearance to maintain tissue fitness
Katherine Stewart, Kevin AU Gonzales, Shaopeng Yuan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS
Rémi Trimbour, Ina Maria Deutschmann, Laura Cantini
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Optimizing data integration improves Gene Regulatory Network inference in Arabidopsis thaliana
Océane Cassan, Charles‐Henri Lecellier, Antoine Martin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
NetREm Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulation
Saniya Khullar, Xiang Huang, Raghu Ramesh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
SPREd: A simulation-supervised neural network tool for gene regulatory network reconstruction
Zijun Wu, Saurabh Sinha
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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