OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
ODGI: understanding pangenome graphs
Andrea Guarracino, Simon Heumos, Sven Nahnsen, et al.
Bioinformatics (2022) Vol. 38, Iss. 13, pp. 3319-3326
Open Access | Times Cited: 97
Andrea Guarracino, Simon Heumos, Sven Nahnsen, et al.
Bioinformatics (2022) Vol. 38, Iss. 13, pp. 3319-3326
Open Access | Times Cited: 97
Showing 26-50 of 97 citing articles:
Taurine pangenome uncovers a segmental duplication upstream ofKITassociated with depigmentation in white-headed cattle
S Milia, Alexander S. Leonard, Xena Marie Mapel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
S Milia, Alexander S. Leonard, Xena Marie Mapel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
A pangenomic perspective of the Lake Malawi cichlid radiation reveals extensive structural variation driven by transposable elements
Fu Xiang Quah, Miguel Vasconcelos Almeida, Moritz Blumer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 6
Fu Xiang Quah, Miguel Vasconcelos Almeida, Moritz Blumer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 6
Graph-based pan-genomes: increased opportunities in plant genomics
Shuo Wang, Yong-Qing Qian, Ru-Peng Zhao, et al.
Journal of Experimental Botany (2022) Vol. 74, Iss. 1, pp. 24-39
Closed Access | Times Cited: 26
Shuo Wang, Yong-Qing Qian, Ru-Peng Zhao, et al.
Journal of Experimental Botany (2022) Vol. 74, Iss. 1, pp. 24-39
Closed Access | Times Cited: 26
Storing and analyzing a genome on a blockchain
Gamze Gürsoy, Charlotte M. Brannon, Eric Ni, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 22
Gamze Gürsoy, Charlotte M. Brannon, Eric Ni, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 22
Exploring Pan-Genomes: An Overview of Resources and Tools for Unraveling Structure, Function, and Evolution of Crop Genes and Genomes
Sushma Naithani, Cecilia Deng, Sunil Kumar Sahu, et al.
Biomolecules (2023) Vol. 13, Iss. 9, pp. 1403-1403
Open Access | Times Cited: 12
Sushma Naithani, Cecilia Deng, Sunil Kumar Sahu, et al.
Biomolecules (2023) Vol. 13, Iss. 9, pp. 1403-1403
Open Access | Times Cited: 12
Global diversity, recurrent evolution, and recent selection on amylase structural haplotypes in humans
Davide Bolognini, Alma Halgren, Runyang Nicolas Lou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Davide Bolognini, Alma Halgren, Runyang Nicolas Lou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Plant pangenomics, current practice and future direction
Haifei Hu, Jian Wang, Shuai Nie, et al.
Agriculture Communications (2024) Vol. 2, Iss. 2, pp. 100039-100039
Open Access | Times Cited: 4
Haifei Hu, Jian Wang, Shuai Nie, et al.
Agriculture Communications (2024) Vol. 2, Iss. 2, pp. 100039-100039
Open Access | Times Cited: 4
Cluster-efficient pangenome graph construction with nf-core/pangenome
Simon Heumos, Michael Heuer, Friederike Hanssen, et al.
Bioinformatics (2024) Vol. 40, Iss. 11
Open Access | Times Cited: 4
Simon Heumos, Michael Heuer, Friederike Hanssen, et al.
Bioinformatics (2024) Vol. 40, Iss. 11
Open Access | Times Cited: 4
The origin and maintenance of supergenes contributing to ecological adaptation in Atlantic herring
Minal Jamsandekar, Mafalda S. Ferreira, Mats E. Pettersson, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
Minal Jamsandekar, Mafalda S. Ferreira, Mats E. Pettersson, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
Interactive visualization and interpretation of pangenome graphs by linear-reference-based coordinate projection and annotation integration
Zepu Miao, Jia‐Xing Yue
Genome Research (2025), pp. gr.279461.124-gr.279461.124
Open Access
Zepu Miao, Jia‐Xing Yue
Genome Research (2025), pp. gr.279461.124-gr.279461.124
Open Access
Developing pangenomes for large and complex plant genomes and their representation formats
Pradeep Ruperao, Parimalan Rangan, Trushar Shah, et al.
Journal of Advanced Research (2025)
Open Access
Pradeep Ruperao, Parimalan Rangan, Trushar Shah, et al.
Journal of Advanced Research (2025)
Open Access
Genetic Modulation of Protein Expression in Rat Brain
Ling Li, Zhiping Wu, Andrea Guarracino, et al.
iScience (2025) Vol. 28, Iss. 3, pp. 112079-112079
Open Access
Ling Li, Zhiping Wu, Andrea Guarracino, et al.
iScience (2025) Vol. 28, Iss. 3, pp. 112079-112079
Open Access
Cattle T2T X Chromosome: Insights into Natural Neocentromere Evolution
Wai Yee Low, Paulene Pineda, Callum Macphillamy, et al.
Research Square (Research Square) (2025)
Closed Access
Wai Yee Low, Paulene Pineda, Callum Macphillamy, et al.
Research Square (Research Square) (2025)
Closed Access
Meiye Jiang, Qiheng Qian, Mingming Lu, et al.
The Plant Journal (2025) Vol. 122, Iss. 1
Closed Access
HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph
Joshua Daniel Rubin, Nicola Alexandra Vogel, Shyam Gopalakrishnan, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 6, pp. e1011148-e1011148
Open Access | Times Cited: 10
Joshua Daniel Rubin, Nicola Alexandra Vogel, Shyam Gopalakrishnan, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 6, pp. e1011148-e1011148
Open Access | Times Cited: 10
Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads
Zuyu Yang, Andrea Guarracino, Patrick J. Biggs, et al.
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 10
Zuyu Yang, Andrea Guarracino, Patrick J. Biggs, et al.
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 10
Pangenome graph layout by Path-Guided Stochastic Gradient Descent
Simon Heumos, Andrea Guarracino, Jan-Niklas M. Schmelzle, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access | Times Cited: 3
Simon Heumos, Andrea Guarracino, Jan-Niklas M. Schmelzle, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access | Times Cited: 3
Fitness consequences of structural variation inferred from a House Finch pangenome
Bohao Fang, Scott V. Edwards
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 47
Open Access | Times Cited: 3
Bohao Fang, Scott V. Edwards
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 47
Open Access | Times Cited: 3
Taurine pangenome uncovers a segmental duplication upstream ofKITassociated with depigmentation in white-headed cattle
S Milia, Alexander S. Leonard, Xena Marie Mapel, et al.
Genome Research (2024), pp. gr.279064.124-gr.279064.124
Closed Access | Times Cited: 3
S Milia, Alexander S. Leonard, Xena Marie Mapel, et al.
Genome Research (2024), pp. gr.279064.124-gr.279064.124
Closed Access | Times Cited: 3
GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
Bruno Contreras‐Moreira, Shradha Saraf, Guy Naamati, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 7
Bruno Contreras‐Moreira, Shradha Saraf, Guy Naamati, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 7
From the reference human genome to human pangenome: Premise, promise and challenge
Vipin Kumar Singh, Shweta Pandey, Anshu Bhardwaj
Frontiers in Genetics (2022) Vol. 13
Open Access | Times Cited: 12
Vipin Kumar Singh, Shweta Pandey, Anshu Bhardwaj
Frontiers in Genetics (2022) Vol. 13
Open Access | Times Cited: 12
Pangenome reconstruction in rats enhances genotype-phenotype mapping and novel variant discovery
Flavia Villani, Andrea Guarracino, Rachel R. Ward, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Flavia Villani, Andrea Guarracino, Rachel R. Ward, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Fitness consequences of structural variation inferred from a House Finch pangenome
Bohao Fang, Scott V. Edwards
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Bohao Fang, Scott V. Edwards
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Panacus: fast and exact pangenome growth and core size estimation
Luca Parmigiani, Erik Garrison, Jens Stoye, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Luca Parmigiani, Erik Garrison, Jens Stoye, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Harbouring Starships: the accumulation of large horizontal gene transfers in domesticated and pathogenic fungi
Samuel O’Donnell, Gabriela D Rezende, Jean‐Philippe Vernadet, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
Samuel O’Donnell, Gabriela D Rezende, Jean‐Philippe Vernadet, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
