
OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
S.K. Burley, Charmi Bhikadiya, Chunxiao Bi, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D488-D508
Open Access | Times Cited: 487
S.K. Burley, Charmi Bhikadiya, Chunxiao Bi, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D488-D508
Open Access | Times Cited: 487
Showing 26-50 of 487 citing articles:
Deep learning for advancing peptide drug development: Tools and methods in structure prediction and design
Xinyi Wu, Huitian Lin, Renren Bai, et al.
European Journal of Medicinal Chemistry (2024) Vol. 268, pp. 116262-116262
Closed Access | Times Cited: 13
Xinyi Wu, Huitian Lin, Renren Bai, et al.
European Journal of Medicinal Chemistry (2024) Vol. 268, pp. 116262-116262
Closed Access | Times Cited: 13
VOGDB—Database of Virus Orthologous Groups
Lovro Trgovec-Greif, Hans-Jörg Hellinger, Jean Mainguy, et al.
Viruses (2024) Vol. 16, Iss. 8, pp. 1191-1191
Open Access | Times Cited: 13
Lovro Trgovec-Greif, Hans-Jörg Hellinger, Jean Mainguy, et al.
Viruses (2024) Vol. 16, Iss. 8, pp. 1191-1191
Open Access | Times Cited: 13
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice,Wiki and Databases
Florian Tesson, Rémi Planel, Artyom A. Egorov, et al.
Peer Community Journal (2024) Vol. 4
Open Access | Times Cited: 13
Florian Tesson, Rémi Planel, Artyom A. Egorov, et al.
Peer Community Journal (2024) Vol. 4
Open Access | Times Cited: 13
RCSB Protein Data Bank: supporting research and education worldwide through explorations of experimentally determined and computationally predicted atomic level 3D biostructures
S.K. Burley, Dennis W. Piehl, Brinda Vallat, et al.
IUCrJ (2024) Vol. 11, Iss. 3, pp. 279-286
Open Access | Times Cited: 12
S.K. Burley, Dennis W. Piehl, Brinda Vallat, et al.
IUCrJ (2024) Vol. 11, Iss. 3, pp. 279-286
Open Access | Times Cited: 12
Reliable method for predicting the binding affinity of RNA-small molecule interactions using machine learning
Sowmya Ramaswamy Krishnan, Arijit Roy, M. Michael Gromiha
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 11
Sowmya Ramaswamy Krishnan, Arijit Roy, M. Michael Gromiha
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 11
The ancient Z-DNA and Z-RNA specific Zα fold has evolved modern roles in immunity and transcription through the natural selection of flipons
Alan Herbert
Royal Society Open Science (2024) Vol. 11, Iss. 6
Open Access | Times Cited: 11
Alan Herbert
Royal Society Open Science (2024) Vol. 11, Iss. 6
Open Access | Times Cited: 11
Exploring Citrus sinensis Phytochemicals as Potential Inhibitors for Breast Cancer Genes BRCA1 and BRCA2 Using Pharmacophore Modeling, Molecular Docking, MD Simulations, and DFT Analysis
Mehreen Zia, Shagufta Parveen, Nusrat Shafiq, et al.
ACS Omega (2024) Vol. 9, Iss. 2, pp. 2161-2182
Open Access | Times Cited: 10
Mehreen Zia, Shagufta Parveen, Nusrat Shafiq, et al.
ACS Omega (2024) Vol. 9, Iss. 2, pp. 2161-2182
Open Access | Times Cited: 10
Deep learning for the PSIPRED Protein Analysis Workbench
Daniel Buchan, Lewis Moffat, Andy M. Lau, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. W1, pp. W287-W293
Open Access | Times Cited: 10
Daniel Buchan, Lewis Moffat, Andy M. Lau, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. W1, pp. W287-W293
Open Access | Times Cited: 10
Rationally seeded computational protein design of ɑ-helical barrels
Katherine I. Albanese, Rokas Petrenas, Fabio Pirro, et al.
Nature Chemical Biology (2024) Vol. 20, Iss. 8, pp. 991-999
Open Access | Times Cited: 10
Katherine I. Albanese, Rokas Petrenas, Fabio Pirro, et al.
Nature Chemical Biology (2024) Vol. 20, Iss. 8, pp. 991-999
Open Access | Times Cited: 10
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA–ligand interactions
Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 13, pp. 7465-7486
Open Access | Times Cited: 10
Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 13, pp. 7465-7486
Open Access | Times Cited: 10
GPCRdb in 2025: adding odorant receptors, data mapper, structure similarity search and models of physiological ligand complexes
Luis P Taracena Herrera, Søren Norge Andreassen, Jimmy Caroli, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D425-D435
Open Access | Times Cited: 10
Luis P Taracena Herrera, Søren Norge Andreassen, Jimmy Caroli, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D425-D435
Open Access | Times Cited: 10
Diversity, origin, and evolution of the ESCRT systems
Kira S. Makarova, Victor Tobiasson, Yuri I. Wolf, et al.
mBio (2024) Vol. 15, Iss. 3
Open Access | Times Cited: 9
Kira S. Makarova, Victor Tobiasson, Yuri I. Wolf, et al.
mBio (2024) Vol. 15, Iss. 3
Open Access | Times Cited: 9
B. glomerulata Promotes Neuroprotection Against Ischemic Stroke by Inhibiting Apoptosis through the Activation of PI3K/AKT/mTOR Pathway
Zihan Xu, Li Yang, Peng-lai Pi, et al.
Phytomedicine (2024) Vol. 132, pp. 155817-155817
Open Access | Times Cited: 9
Zihan Xu, Li Yang, Peng-lai Pi, et al.
Phytomedicine (2024) Vol. 132, pp. 155817-155817
Open Access | Times Cited: 9
The perpetual motion machine of AI-generated data and the distraction of ChatGPT as a ‘scientist’
Jennifer Listgarten
Nature Biotechnology (2024) Vol. 42, Iss. 3, pp. 371-373
Closed Access | Times Cited: 8
Jennifer Listgarten
Nature Biotechnology (2024) Vol. 42, Iss. 3, pp. 371-373
Closed Access | Times Cited: 8
Identification of type VI secretion system effector-immunity pairs using structural bioinformatics
Alexander Martin Geller, Maor Shalom, David Zlotkin, et al.
Molecular Systems Biology (2024) Vol. 20, Iss. 6, pp. 702-718
Open Access | Times Cited: 8
Alexander Martin Geller, Maor Shalom, David Zlotkin, et al.
Molecular Systems Biology (2024) Vol. 20, Iss. 6, pp. 702-718
Open Access | Times Cited: 8
DRAMP 4.0: an open-access data repository dedicated to the clinical translation of antimicrobial peptides
T. Ma, Yanchao Liu, Bingxin Yu, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D403-D410
Open Access | Times Cited: 8
T. Ma, Yanchao Liu, Bingxin Yu, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D403-D410
Open Access | Times Cited: 8
How Do Microbial Metabolites Interact with Their Protein Targets?
Mario Astigarraga, Andrés Sánchez-Ruiz, Aminata Diop-Aw, et al.
Journal of Chemical Information and Modeling (2025) Vol. 65, Iss. 1, pp. 201-213
Closed Access | Times Cited: 1
Mario Astigarraga, Andrés Sánchez-Ruiz, Aminata Diop-Aw, et al.
Journal of Chemical Information and Modeling (2025) Vol. 65, Iss. 1, pp. 201-213
Closed Access | Times Cited: 1
Data and AI-driven synthetic binding protein discovery
Yanlin Li, Zixin Duan, Zhenwen Li, et al.
Trends in Pharmacological Sciences (2025)
Closed Access | Times Cited: 1
Yanlin Li, Zixin Duan, Zhenwen Li, et al.
Trends in Pharmacological Sciences (2025)
Closed Access | Times Cited: 1
Probing the chemical landscape of 3,4-dichloro-1,2,5-thiadiazole: DFT calculations and biological activity insights
Arusa Aftab, Mohammad Shaheer, N. Garg, et al.
Spectroscopy Letters (2025), pp. 1-22
Closed Access | Times Cited: 1
Arusa Aftab, Mohammad Shaheer, N. Garg, et al.
Spectroscopy Letters (2025), pp. 1-22
Closed Access | Times Cited: 1
Structure-Based Approaches for Protein–Protein Interaction Prediction Using Machine Learning and Deep Learning
Despoina P. Kiouri, Georgios Batsis, Christos T. Chasapis
Biomolecules (2025) Vol. 15, Iss. 1, pp. 141-141
Open Access | Times Cited: 1
Despoina P. Kiouri, Georgios Batsis, Christos T. Chasapis
Biomolecules (2025) Vol. 15, Iss. 1, pp. 141-141
Open Access | Times Cited: 1
The Physics-AI Dialogue in Drug Design
Pablo Andrés Vargas-Rosales, Amedeo Caflisch
RSC Medicinal Chemistry (2025)
Open Access | Times Cited: 1
Pablo Andrés Vargas-Rosales, Amedeo Caflisch
RSC Medicinal Chemistry (2025)
Open Access | Times Cited: 1
Foundation models in bioinformatics
Fei Guo, Renchu Guan, Yaohang Li, et al.
National Science Review (2025)
Open Access | Times Cited: 1
Fei Guo, Renchu Guan, Yaohang Li, et al.
National Science Review (2025)
Open Access | Times Cited: 1
Are protein language models the new universal key?
Konstantin Weißenow, Burkhard Rost
Current Opinion in Structural Biology (2025) Vol. 91, pp. 102997-102997
Open Access | Times Cited: 1
Konstantin Weißenow, Burkhard Rost
Current Opinion in Structural Biology (2025) Vol. 91, pp. 102997-102997
Open Access | Times Cited: 1
β-Lactamase diversity in Pseudomonas aeruginosa
Andrew R. Mack, Andrea M. Hujer, María F. Mojica, et al.
Antimicrobial Agents and Chemotherapy (2025) Vol. 69, Iss. 3
Open Access | Times Cited: 1
Andrew R. Mack, Andrea M. Hujer, María F. Mojica, et al.
Antimicrobial Agents and Chemotherapy (2025) Vol. 69, Iss. 3
Open Access | Times Cited: 1
Perillaldehyde targeting PARP1 to inhibit TRPM2-CaMKII/CaN signal transduction in diabetic cardiomyopathy
Qianqian Niu, Zhiren Fu, Bing-Yan Mao, et al.
International Immunopharmacology (2025) Vol. 150, pp. 114291-114291
Closed Access | Times Cited: 1
Qianqian Niu, Zhiren Fu, Bing-Yan Mao, et al.
International Immunopharmacology (2025) Vol. 150, pp. 114291-114291
Closed Access | Times Cited: 1