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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SoupX removes ambient RNA contamination from droplet based single-cell RNA sequencing data
Matthew D. Young, Sam Behjati
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 107

Showing 26-50 of 107 citing articles:

Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics
Dylan Kotliar, Aaron E. Lin, James Logue, et al.
Cell (2020) Vol. 183, Iss. 5, pp. 1383-1401.e19
Open Access | Times Cited: 96
Computational Methods for Single-Cell RNA Sequencing
Brian Hie, Joshua M. Peters, Sarah K. Nyquist, et al.
Annual Review of Biomedical Data Science (2020) Vol. 3, Iss. 1, pp. 339-364
Open Access | Times Cited: 92
Droplet-based single cell RNAseq tools: a practical guide
Robert Salomon, Dominik C. Kaczorowski, Fátima Valdés‐Mora, et al.
Lab on a Chip (2019) Vol. 19, Iss. 10, pp. 1706-1727
Closed Access | Times Cited: 91
Clonally expanded, GPR15-expressing pathogenic effector T H 2 cells are associated with eosinophilic esophagitis
Duncan M. Morgan, Bert Ruiter, Neal P. Smith, et al.
Science Immunology (2021) Vol. 6, Iss. 62
Open Access | Times Cited: 81
Single-cell transcriptomic analysis of adult mouse pituitary reveals sexual dimorphism and physiologic demand-induced cellular plasticity
Yugong Ho, Peng Hu, Michael T. Peel, et al.
Protein & Cell (2020) Vol. 11, Iss. 8, pp. 565-583
Open Access | Times Cited: 75
Transcriptional and anatomical diversity of medium spiny neurons in the primate striatum
Jing He, Michael Kleyman, Jianjiao Chen, et al.
Current Biology (2021) Vol. 31, Iss. 24, pp. 5473-5486.e6
Open Access | Times Cited: 58
Kr-h1 maintains distinct caste-specific neurotranscriptomes in response to socially regulated hormones
Janko Gospočić, Karl M. Glastad, Lihong Sheng, et al.
Cell (2021) Vol. 184, Iss. 23, pp. 5807-5823.e14
Open Access | Times Cited: 58
MALAT1 expression indicates cell quality in single-cell RNA sequencing data
Zoe A. Clarke, Gary D. Bader
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 9
High‐throughput, microscope‐based sorting to dissect cellular heterogeneity
Nicholas Hasle, Anthony Cooke, Sanjay Srivatsan, et al.
Molecular Systems Biology (2020) Vol. 16, Iss. 6
Open Access | Times Cited: 69
Consistent RNA sequencing contamination in GTEx and other data sets
Tim O. Nieuwenhuis, Stephanie Yang, Rohan Verma, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 66
scCancer: a package for automated processing of single-cell RNA-seq data in cancer
Wenbo Guo, Dongfang Wang, Shicheng Wang, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 3
Open Access | Times Cited: 64
Expression profiling of the mature C. elegans nervous system by single-cell RNA-Sequencing
Seth R. Taylor, Gabriel Santpere, Molly B. Reilly, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 61
H3.3 G34W Promotes Growth and Impedes Differentiation of Osteoblast-Like Mesenchymal Progenitors in Giant Cell Tumor of Bone
Sima Khazaei, Nicolas Jay, Shriya Deshmukh, et al.
Cancer Discovery (2020) Vol. 10, Iss. 12, pp. 1968-1987
Open Access | Times Cited: 60
Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis
Michael J. Borrett, Brendan T. Innes, Danielle Jeong, et al.
Cell Reports (2020) Vol. 32, Iss. 6, pp. 108022-108022
Closed Access | Times Cited: 59
Single-Nucleus RNA-Seq Reveals Dysregulation of Striatal Cell Identity Due to Huntington's Disease Mutations
Sonia Malaiya, Marcia Cortes-Gutierrez, Brian R. Herb, et al.
Journal of Neuroscience (2021) Vol. 41, Iss. 25, pp. 5534-5552
Open Access | Times Cited: 53
scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution
Bilge Esin Öztürk, Molly Johnson, Michael Kleyman, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 44
Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology
Travis Hughes, Marc H. Wadsworth, Todd M. Gierahn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 45
Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
Brenda Marquina-Sanchez, Nikolaus Fortelny, Matthias Farlik, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 44
Single cell derived mRNA signals across human kidney tumors
Matthew D. Young, Thomas J. Mitchell, Lars Custers, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 39
Whole-organism eQTL mapping at cellular resolution with single-cell sequencing
Eyal Ben‐David, James Boocock, Longhua Guo, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 38
Drosophila PDGF/VEGF signaling from muscles to hepatocyte-like cells protects against obesity
Arpan C. Ghosh, Sudhir Gopal Tattikota, Yifang Liu, et al.
eLife (2020) Vol. 9
Open Access | Times Cited: 36
Evaluating genetic causes of azoospermia: What can we learn from a complex cellular structure and single-cell transcriptomics of the human testis?
Samuele Soraggi, Meritxell Riera, Ewa Rajpert‐De Meyts, et al.
Human Genetics (2020) Vol. 140, Iss. 1, pp. 183-201
Closed Access | Times Cited: 34
The promise of single-cell genomics in plants
José L. McFaline‐Figueroa, Cole Trapnell, Josh T. Cuperus
Current Opinion in Plant Biology (2020) Vol. 54, pp. 114-121
Open Access | Times Cited: 33
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’
David S. Fischer, Meshal Ansari, K Wagner, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 31
An Antibody Targeting ICOS Increases Intratumoral Cytotoxic to Regulatory T-cell Ratio and Induces Tumor Regression
Richard C.A. Sainson, Anil K. Thotakura, Miha Kosmač, et al.
Cancer Immunology Research (2020) Vol. 8, Iss. 12, pp. 1568-1582
Open Access | Times Cited: 32

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