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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system
Will A. Overholt, Martin Hölzer, Patricia Geesink, et al.
Environmental Microbiology (2020) Vol. 22, Iss. 9, pp. 4000-4013
Open Access | Times Cited: 62

Showing 26-50 of 62 citing articles:

Technical note: overcoming host contamination in bovine vaginal metagenomic samples with nanopore adaptive sequencing
Chian Teng Ong, Elizabeth M. Ross, G. Boe-Hansen, et al.
Journal of Animal Science (2021) Vol. 100, Iss. 1
Open Access | Times Cited: 18
Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
Lauren Michelle Lui, Torben Nielsen
mSystems (2024) Vol. 9, Iss. 9
Open Access | Times Cited: 2
Nanopore sequencing enables novel detection of deuterium incorporation in DNA
Christian Höner zu Siederdissen, Jannes Spangenberg, Kevin Bisdorf, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 3584-3594
Open Access | Times Cited: 2
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
Ankita Kothari, Simon Roux, Hanqiao Zhang, et al.
mSystems (2021) Vol. 6, Iss. 3
Open Access | Times Cited: 14
Metaviromics coupled with phage-host identification to open the viral ‘black box’
Kira Moon, Jang‐Cheon Cho
The Journal of Microbiology (2021) Vol. 59, Iss. 3, pp. 311-323
Closed Access | Times Cited: 12
Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
Samuel Martin, Darren Heavens, Yuxuan Lan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 12
MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes
Catherine Maggiori, Isabelle Raymond‐Bouchard, Laura Brennan, et al.
Scientific Reports (2021) Vol. 11, Iss. 1
Open Access | Times Cited: 12
High-Resolution Metagenomics of Human Gut Microbiota Generated by Nanopore and Illumina Hybrid Metagenome Assembly
Lianwei Ye, Ning Dong, Wenguang Xiong, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 9
Legionella pneumophila CRISPR-Cas Suggests Recurrent Encounters with One or More Phages in the Family Microviridae
Shayna R. Deecker, Malene L. Urbanus, Beth Nicholson, et al.
Applied and Environmental Microbiology (2021) Vol. 87, Iss. 17
Open Access | Times Cited: 11
MIntO: A Modular and Scalable Pipeline For Microbiome Metagenomic and Metatranscriptomic Data Integration
Carmen Saenz, Eleonora Nigro, Vithiagaran Gunalan, et al.
Frontiers in Bioinformatics (2022) Vol. 2
Open Access | Times Cited: 7
Seven quick tips for gene-focused computational pangenomic analysis
Vincenzo Bonnici, Davide Chicco
BioData Mining (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 1
Functional meta-omics provide critical insights into long- and short-read assemblies
Valentina Galata, Susheel Bhanu Busi, Benoît J. Kunath, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 9
Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction
Sophie A. Simon, Katharina Schmidt, Lea Griesdorn, et al.
BMC Genomics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 3
nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning
Sabrina Krakau, Daniel Straub, Hadrien Gourlé, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 7
Ten simple rules for investigating (meta)genomic data from environmental ecosystems
Paton Vuong, Michael J. Wise, Andrew S. Whiteley, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 12, pp. e1010675-e1010675
Open Access | Times Cited: 4
Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction
Sophie A. Simon, Katharina Schmidt, Lea Griesdorn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Meeting report: The first soil viral workshop 2022
Živilė Buivydaitė, Laxman Aryal, Felipe Borim Corrêa, et al.
Virus Research (2023) Vol. 331, pp. 199121-199121
Open Access | Times Cited: 2
Targeted decontamination of sequencing data with CLEAN
Marie Lataretu, Sebastian Krautwurst, Adrian Viehweger, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Closed genomes uncover a saltwater species ofCandidatusElectronema and shed new light on the boundary between marine and freshwater cable bacteria
Mantas Sereika, Francesca Petriglieri, Thomas Bygh Nymann Jensen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 3
Comparing genomes recovered from time-series metagenomes using long- and short-read sequencing technologies
Luis H. Orellana, Karen Krüger, Chandni Sidhu, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 1
Insights into the diversity of grassland soil bacterial communities associated with four contrasting Köppen climatic zones of India
Girish R Nair, S. Raja
Malaysian Journal of Microbiology (2024)
Open Access
Pathogens of the oak processionary moth Thaumetopoea processionea: Developing a user-friendly bioassay system and metagenome analyses for microorganisms
Lea Schäfer, Johannes A. Jehle, Regina Kleespies, et al.
Journal of Invertebrate Pathology (2024) Vol. 205, pp. 108121-108121
Open Access
Leaf: an ultrafast filter for population-scale long-read SV detection
Chenxu Pan, Knut Reinert
Genome biology (2024) Vol. 25, Iss. 1
Open Access
Recovery of novel microbial genomes
Mantas Sereika
(2024)
Open Access
Endophytic Microbiome: An Insight into the Hidden World of Microorganisms Within Plants
P. Soumya, K. Jayachandran, E. K. Radhakrishnan
Rhizosphere biology (2024), pp. 265-287
Closed Access

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