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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
Avi Srivastava, Laraib Malik, Tom Smith, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 241

Showing 26-50 of 241 citing articles:

Modular and efficient pre-processing of single-cell RNA-seq
Páll Melsted, A. Sina Booeshaghi, Fan Gao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 103
Nonparametric expression analysis using inferential replicate counts
Anqi Zhu, Avi Srivastava, Joseph G. Ibrahim, et al.
Nucleic Acids Research (2019) Vol. 47, Iss. 18, pp. e105-e105
Open Access | Times Cited: 94
Homeostatic IL-13 in healthy skin directs dendritic cell differentiation to promote TH2 and inhibit TH17 cell polarization
Johannes U. Mayer, Kerry L. Hilligan, Jodie Chandler, et al.
Nature Immunology (2021) Vol. 22, Iss. 12, pp. 1538-1550
Closed Access | Times Cited: 93
Computational Methods for Single-Cell RNA Sequencing
Brian Hie, Joshua M. Peters, Sarah K. Nyquist, et al.
Annual Review of Biomedical Data Science (2020) Vol. 3, Iss. 1, pp. 339-364
Open Access | Times Cited: 92
miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data
Ariel A. Hippen, Matías Marín Falco, Lukas M. Weber, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 8, pp. e1009290-e1009290
Open Access | Times Cited: 73
Single-cell RNA-seq unravels alterations of the human spermatogonial stem cell compartment in patients with impaired spermatogenesis
Sara Di Persio, Tobias Tekath, Lara Marie Siebert-Kuss, et al.
Cell Reports Medicine (2021) Vol. 2, Iss. 9, pp. 100395-100395
Open Access | Times Cited: 72
BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method
Shanwen Sun, Lei Xu, Quan Zou, et al.
Bioinformatics (2020) Vol. 37, Iss. 9, pp. 1319-1321
Open Access | Times Cited: 71
Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data
Dongze He, Mohsen Zakeri, Hirak Sarkar, et al.
Nature Methods (2022) Vol. 19, Iss. 3, pp. 316-322
Open Access | Times Cited: 70
CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories
Carlo Emanuele Villa, Cristina Cheroni, Christoph Dotter, et al.
Cell Reports (2022) Vol. 39, Iss. 1, pp. 110615-110615
Open Access | Times Cited: 63
Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution
Tim Stuart, Stephanie Hao, Bingjie Zhang, et al.
Nature Biotechnology (2022) Vol. 41, Iss. 6, pp. 806-812
Open Access | Times Cited: 61
Nanoparticle single-cell multiomic readouts reveal that cell heterogeneity influences lipid nanoparticle-mediated messenger RNA delivery
Curtis Dobrowolski, Kalina Paunovska, Elisa Schrader Echeverri, et al.
Nature Nanotechnology (2022) Vol. 17, Iss. 8, pp. 871-879
Closed Access | Times Cited: 60
Updates on Immunotherapy and Immune Landscape in Renal Clear Cell Carcinoma
Myung‐Chul Kim, Jin Zeng, Ryan Kolb, et al.
Cancers (2021) Vol. 13, Iss. 22, pp. 5856-5856
Open Access | Times Cited: 59
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
Charlotte Soneson, Avi Srivastava, Rob Patro, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 1, pp. e1008585-e1008585
Open Access | Times Cited: 58
Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data
Rui Hong, Yusuke Koga, Shruthi Bandyadka, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 48
Coordinated single-cell tumor microenvironment dynamics reinforce pancreatic cancer subtype
Ki Oh, Yun Jae Yoo, Luke A. Torre-Healy, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 33
Pioneer factor ASCL1 cooperates with the mSWI/SNF complex at distal regulatory elements to regulate human neural differentiation
Oana Păun, Yu Xuan Tan, Harshil Patel, et al.
Genes & Development (2023) Vol. 37, Iss. 5-6, pp. 218-242
Open Access | Times Cited: 30
Multimodal single-cell datasets characterize antigen-specific CD8+ T cells across SARS-CoV-2 vaccination and infection
Bingjie Zhang, Rabi Upadhyay, Yuhan Hao, et al.
Nature Immunology (2023) Vol. 24, Iss. 10, pp. 1725-1734
Open Access | Times Cited: 28
Single-cell RNA sequencing facilitates the elucidation of the complete biosynthesis of the antidepressant hyperforin in St. John’s wort
Song Wu, Ana Luísa Malaco Morotti, Jun Yang, et al.
Molecular Plant (2024) Vol. 17, Iss. 9, pp. 1439-1457
Closed Access | Times Cited: 9
kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq
Delaney K. Sullivan, Kyung Hoi Min, Kristján Eldjárn Hjörleifsson, et al.
Nature Protocols (2024)
Closed Access | Times Cited: 9
Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single‐cell RNA sequencing analyses
Jorge A. Tzec‐Interián, Daianna González‐Padilla, Elsa Góngora‐Castillo
Quantitative Biology (2025) Vol. 13, Iss. 2
Open Access | Times Cited: 1
Microbial-Mediated Carbon Metabolism in the Subtropical Marine Mangroves with the Impact of Shrimp Pond Discharge
Sen Zeng, Shuming Mo, Xiaoling Wu, et al.
Marine Environmental Research (2025), pp. 106980-106980
Closed Access | Times Cited: 1
A single-nucleus RNA sequencing atlas of the postnatal retina of the shark Scyliorhinus canicula
Nicolás Vidal-Vázquez, Ismael Hernández‐Núñez, Pablo Carballo-Pacoret, et al.
Scientific Data (2025) Vol. 12, Iss. 1
Open Access | Times Cited: 1
Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity across viruses
Hong Zheng, Aditya Rao, Denis Đermadi, et al.
Immunity (2021) Vol. 54, Iss. 4, pp. 753-768.e5
Open Access | Times Cited: 56
The MURAL collection of prostate cancer patient-derived xenografts enables discovery through preclinical models of uro-oncology
Gail P. Risbridger, Ashlee K. Clark, Laura H. Porter, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 51
Automatic cell type identification methods for single-cell RNA sequencing
Bingbing Xie, Qin Jiang, Antonio Mora, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 5874-5887
Open Access | Times Cited: 51

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