Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The genetic and biochemical determinants of mRNA degradation rates in mammals
Vikram Agarwal, David R. Kelley
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 77

Showing 26-50 of 77 citing articles:

Multiplexed assays of human disease-relevant mutations reveal UTR dinucleotide composition as a major determinant of RNA stability
Jia-Ying Su, Yun-Lin Wang, Yu-Tung Hsieh, et al.
eLife (2025) Vol. 13
Open Access
Uncovering the isoform-resolution kinetic landscape of nonsense-mediated mRNA decay with EZbakR
Justin W. Mabin, Isaac W. Vock, Martin Machyna, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Passive shaping of intra- and intercellular m6A dynamics via mRNA metabolism
David Dierks, Ran Shachar, Ronit Nir, et al.
(2025)
Open Access
PYM1 limits non-canonical Exon Junction Complex occupancy in a gene architecture dependent manner to tune mRNA expression
Manu Sanjeev, Lauren A. Woodward, Matthew Schiff, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
Kuan-Hao Chao, Alan Mao, Anqi Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Developmental dynamics and axonal transport of cerebral cortex projection neuron mRNAsin vivo
Priya Veeraraghavan, Dustin E. Tillman, M. Elizabeth Ross, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Investigating the performance of foundation models on human 3’UTR sequences
Sergey Vilov, Matthias Heinig
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Transcriptional profile of ribosome-associated quality control components and their associated phenotypes in mammalian cells
Otávio Augusto L. dos Santos, Rodolfo L. Carneiro, Rodrigo D. Requião, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 2
Predicting cell-type-specific exon inclusion in the human brain reveals more complex splicing mechanisms in neurons than glia
Lieke Michielsen, Justine Hsu, Anoushka Joglekar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Unveil cis-acting combinatorial mRNA motifs by interpreting deep neural network
Xiaocheng Zeng, Wei Zheng, Qixiu Du, et al.
Bioinformatics (2024) Vol. 40, Iss. Supplement_1, pp. i381-i389
Open Access | Times Cited: 2
Predicting the translation efficiency of messenger RNA in mammalian cells
Dinghai Zheng, Jun Wang, Logan Persyn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Quick and effective approximation of in silico saturation mutagenesis experiments with first-order Taylor expansion
Alexander Sasse, Maria Chikina, Sara Mostafavi
iScience (2024) Vol. 27, Iss. 9, pp. 110807-110807
Open Access | Times Cited: 2
From computational models of the splicing code to regulatory mechanisms and therapeutic implications
Charlotte Capitanchik, Oscar G. Wilkins, Nils Wagner, et al.
Nature Reviews Genetics (2024)
Closed Access | Times Cited: 2
The G3BP Stress-Granule Proteins Reinforce the Translation Program of the Integrated Stress Response
Jarrett Smith, David P. Bartel
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Orthrus: Towards Evolutionary and Functional RNA Foundation Models
Philip Fradkin, Ruian Shi, Keren Isaev, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Mitotic checkpoint gene expression is tuned by codon usage bias
Eric Esposito, Douglas E. Weidemann, Jessie Rogers, et al.
The EMBO Journal (2022) Vol. 41, Iss. 15
Open Access | Times Cited: 9
A curated census of pathogenic and likely pathogenic UTR variants and evaluation of deep learning models for variant effect prediction
Emma Bohn, Tammy T. Y. Lau, Omar Wagih, et al.
Frontiers in Molecular Biosciences (2023) Vol. 10
Open Access | Times Cited: 4
Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox
Megan D. Schertzer, Andrew Stirn, Keren Isaev, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
An engineered ligand-responsive Csy4 endoribonuclease controls transgene expression from Sendai virus vectors
Takumi Kishimoto, Ken Nishimura, Kana Morishita, et al.
Journal of Biological Engineering (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 1
Predicting cell population-specific gene expression from genomic sequence
Lieke Michielsen, Marcel J. T. Reinders, Ahmed Mahfouz
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 1
Multiplexed Assays of Human Disease-relevant Mutations Reveal UTR Dinucleotide Composition as a Major Determinant of RNA Stability
Jia-Ying Su, Yun-Lin Wang, Yu-Tung Hsieh, et al.
(2024)
Open Access | Times Cited: 1
Multiplexed Assays of Human Disease-relevant Mutations Reveal UTR Dinucleotide Composition as a Major Determinant of RNA Stability
Jia-Ying Su, Yun-Lin Wang, Yu-Tung Hsieh, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 1
Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework
Niko Popitsch, Tobias Neumann, Arndt von Haeseler, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 1
A Suite of Foundation Models Captures the Contextual Interplay Between Codons
Mohsen Naghipourfar, Siyu Chen, Michael Howard, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Diverse intrinsic properties shape transcript stability and stabilization in Mycolicibacterium smegmatis
Huaming Sun, Diego A. Vargas-Blanco, Ying Zhou, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 4
Open Access | Times Cited: 1

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