Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Large-Scale Conformational Changes and Protein Function: Breaking the in silico Barrier
Laura Orellana
Frontiers in Molecular Biosciences (2019) Vol. 6
Open Access | Times Cited: 100

Showing 26-50 of 100 citing articles:

Assembly and Analysis of Cell-Scale Membrane Envelopes
Josh V. Vermaas, Christopher G. Mayne, Eric Shinn, et al.
Journal of Chemical Information and Modeling (2021) Vol. 62, Iss. 3, pp. 602-617
Open Access | Times Cited: 23
DNA Aptamers Block the Receptor Binding Domain at the Spike Protein of SARS-CoV-2
Fabrizio Cleri, Marc F. Lensink, Ralf Blossey
Frontiers in Molecular Biosciences (2021) Vol. 8
Open Access | Times Cited: 22
Extended-ensemble docking to probe dynamic variation of ligand binding sites during large-scale structural changes of proteins
Karan Kapoor, Sundar Thangapandian, Emad Tajkhorshid
Chemical Science (2022) Vol. 13, Iss. 14, pp. 4150-4169
Open Access | Times Cited: 14
Open Structural Data in Precision Medicine
Ruth Nussinov, Hyunbum Jang, Guy Nir, et al.
Annual Review of Biomedical Data Science (2022) Vol. 5, Iss. 1, pp. 95-117
Closed Access | Times Cited: 13
Exploring Large Domain Motions in Proteins Using Atomistic Molecular Dynamics with Enhanced Conformational Sampling
Hisham Dokainish, Yuji Sugita
International Journal of Molecular Sciences (2020) Vol. 22, Iss. 1, pp. 270-270
Open Access | Times Cited: 19
Protein scaffolds in human clinics
Olivia Cano‐Garrido, Naroa Serna, Ugutz Unzueta, et al.
Biotechnology Advances (2022) Vol. 61, pp. 108032-108032
Open Access | Times Cited: 12
3D animation as a tool for integrative modeling of dynamic molecular mechanisms
Margot Riggi, Rachel M. Torrez, Janet Iwasa
Structure (2024) Vol. 32, Iss. 2, pp. 122-130
Closed Access | Times Cited: 2
Structural basis of the selective activation of enzyme isoforms: Allosteric response to activators of β1- and β2-containing AMPK complexes
Elnaz Aledavood, Alessia Forte, Carolina Estarellas, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 3394-3406
Open Access | Times Cited: 15
Conformational Landscape of Cytochrome P450 Reductase Interactions
Manuel Sellner, André Fischer, Charleen G. Don, et al.
International Journal of Molecular Sciences (2021) Vol. 22, Iss. 3, pp. 1023-1023
Open Access | Times Cited: 13
Unravelling viral dynamics through molecular dynamics simulations - A brief overview
Subhomoi Borkotoky, Debajit Dey, Zaved Hazarika, et al.
Biophysical Chemistry (2022) Vol. 291, pp. 106908-106908
Closed Access | Times Cited: 9
No dance, no partner! A tale of receptor flexibility in docking and virtual screening
Andrea Basciu, Lara Callea, Stefano Motta, et al.
Annual reports in medicinal chemistry (2022), pp. 43-97
Closed Access | Times Cited: 9
Interactions of the male contraceptive target EPPIN with semenogelin-1 and small organic ligands
Antoniel Augusto Severo Gomes, Natália C. M. Santos, L Rosa, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 5
Targeting protein conformations with small molecules to control protein complexes
Emmanouil Zacharioudakis, Evripidis Gavathiotis
Trends in Biochemical Sciences (2022) Vol. 47, Iss. 12, pp. 1023-1037
Open Access | Times Cited: 8
Tackling suppressive cancer microenvironment by NARF-derived immune modulatory vaccine and its validation using simulation strategies
Priyanga Paranthaman, V. Shanthi
Frontiers in Physics (2024) Vol. 12
Open Access | Times Cited: 1
Multifunctional in vitro, in silico and DFT analyses on antimicrobial BagremycinA biosynthesized by Micromonospora chokoriensis CR3 from Hieracium canadense
Rabia Tanvir, Saadia Ijaz, Imran Sajid, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 1
Investigating the Role of the N-Terminal Loop of PD-1 in Binding Process Between PD-1 and Nivolumab via Molecular Dynamics Simulation
Wenping Liu, Haoyu Jin, Ting Chen, et al.
Frontiers in Molecular Biosciences (2020) Vol. 7
Open Access | Times Cited: 11
Unraveling the Coupling between Conformational Changes and Ligand Binding in Ribose Binding Protein Using Multiscale Molecular Dynamics and Free-Energy Calculations
Weitong Ren, Hisham Dokainish, Ai Shinobu, et al.
The Journal of Physical Chemistry B (2021) Vol. 125, Iss. 11, pp. 2898-2909
Open Access | Times Cited: 10
Why are large conformational changes well described by harmonic normal modes?
Yves Dehouck, Ugo Bastolla
Biophysical Journal (2021) Vol. 120, Iss. 23, pp. 5343-5354
Open Access | Times Cited: 10
Physics of biomolecular recognition and conformational dynamics
Wen‐Ting Chu, Zhiqiang Yan, Xiakun Chu, et al.
Reports on Progress in Physics (2021) Vol. 84, Iss. 12, pp. 126601-126601
Closed Access | Times Cited: 10
Computation of the Protein Conformational Transition Pathway on Ligand Binding by Linear Response-Driven Molecular Dynamics
Rajat Punia, Gaurav Goel
Journal of Chemical Theory and Computation (2022) Vol. 18, Iss. 5, pp. 3268-3283
Open Access | Times Cited: 7
Csk αC Helix: A Computational Analysis of an Essential Region for Conformational Transitions
Raphael Vinicius Rodrigues Dias, Carolina Tatiani Alves Ferreira, Patricia A. Jennings, et al.
The Journal of Physical Chemistry B (2022) Vol. 126, Iss. 50, pp. 10587-10596
Closed Access | Times Cited: 7
Molecular and Computational Strategies to Increase the Efficiency of CRISPR-Based Techniques
Lucia Mattiello, Mark Rütgers, Maria Fernanda Sua-Rojas, et al.
Frontiers in Plant Science (2022) Vol. 13
Open Access | Times Cited: 6
Structural and functional effects of the L84S mutant in the SARS-COV-2 ORF8 dimer based on microsecond molecular dynamics study
Shafiqul Islam, Md. Rimon Parves, Md. Jahirul Islam, et al.
Journal of Biomolecular Structure and Dynamics (2023) Vol. 42, Iss. 11, pp. 5770-5787
Closed Access | Times Cited: 3
Unveiling the interdomain dynamics of type II DNA topoisomerase through all-atom simulations: Implications for understanding its catalytic cycle
Matic Pavlin, Barbara Herlah, Katja Valjavec, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 3746-3759
Open Access | Times Cited: 3
Kramers’ Theory and the Dependence of Enzyme Dynamics on Trehalose-Mediated Viscosity
José G. Sampedro, Miguel A. Rivera-Morán, Salvador Uribe‐Carvajal
Catalysts (2020) Vol. 10, Iss. 6, pp. 659-659
Open Access | Times Cited: 8

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