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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Jointly defining cell types from multiple single-cell datasets using LIGER
Jialin Liu, Chao Gao, Joshua Sodicoff, et al.
Nature Protocols (2020) Vol. 15, Iss. 11, pp. 3632-3662
Open Access | Times Cited: 144

Showing 51-75 of 144 citing articles:

SCITUNA: single-cell data integration tool using network alignment
Aissa Houdjedj, Yacine Marouf, Mekan Myradov, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
haCCA: Multi-module Integrating of spatial transcriptomes and metabolomes.
Luyu Yang, Xiaotian Shen, Jing Xu, et al.
Research Square (Research Square) (2025)
Closed Access
Microglia transcriptional states and their functional significance: Context drives diversity
Constanze Depp, Jordan L. Doman, Maximilian Hingerl, et al.
Immunity (2025)
Closed Access
Multi-omics research: principles and challenges in integrated analysis
Yunqing Luo, Chuangdian Zhao, Fei Chen
BioDesign Research (2024) Vol. 6, pp. 0059-0059
Closed Access | Times Cited: 3
Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data
Michelle Y. Y. Lee, Klaus H. Kaestner, Mingyao Li
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
The covariance environment defines cellular niches for spatial inference
Doron Haviv, Mohamed I. Gatie, Anna‐Katerina Hadjantonakis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Jeanette Johnson, Ashley Tsang, Jacob T. Mitchell, et al.
Nature Protocols (2023) Vol. 18, Iss. 12, pp. 3690-3731
Open Access | Times Cited: 7
Model-based prediction of spatial gene expression via generative linear mapping
Yasushi Okochi, Shunta Sakaguchi, Ken Nakae, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 16
CellAgent: An LLM-driven Multi-Agent Framework for Automated Single-cell Data Analysis
Yihang Xiao, Jinyi Liu, Yan Zheng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Genomic and single-cell analyses reveal genetic signatures of swimming pattern and diapause strategy in jellyfish
Zhijun Dong, Fanghan Wang, Yali Liu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 2
ScRNAbox: empowering single-cell RNA sequencing on high performance computing systems
Rhalena A. Thomas, Michael R. Fiorini, Saeid Amiri, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Next‐generation spatial transcriptomics: unleashing the power to gear up translational oncology
Nan Wang, Weifeng Hong, Yixing Wu, et al.
MedComm (2024) Vol. 5, Iss. 10
Open Access | Times Cited: 2
Spatial, transcriptomic, and epigenomic analyses link dorsal horn neurons to chronic pain genetic predisposition
Cynthia M. Arokiaraj, Michael J. Leone, Michael Kleyman, et al.
Cell Reports (2024) Vol. 43, Iss. 11, pp. 114876-114876
Closed Access | Times Cited: 2
Forecasting cellular states: from descriptive to predictive biology via single-cell multiomics
Genevieve Stein-O’Brien, Michaela C. Ainslie, Elana J. Fertig
Current Opinion in Systems Biology (2021) Vol. 26, pp. 24-32
Open Access | Times Cited: 15
LncRNA HSPA7 in human atherosclerotic plaques sponges miR-223 and promotes the proinflammatory vascular smooth muscle cell transition
Soo-jin Ann, Hyoeun Bang, Chan Joo Lee, et al.
Experimental & Molecular Medicine (2021) Vol. 53, Iss. 12, pp. 1842-1849
Open Access | Times Cited: 15
Computational Methods for Single-Cell DNA Methylome Analysis
Waleed Iqbal, Wanding Zhou
Genomics Proteomics & Bioinformatics (2022) Vol. 21, Iss. 1, pp. 48-66
Open Access | Times Cited: 10
Macrophage-mediated PDGF Activation Correlates With Regenerative Outcomes Following Musculoskeletal Trauma
Ashish R. Chowdary, Tristan Maerz, Dominic Henn, et al.
Annals of Surgery (2022) Vol. 278, Iss. 2, pp. e349-e359
Closed Access | Times Cited: 10
Integrating transcriptomic datasets across neurological disease identifies unique myeloid subpopulations driving disease‐specific signatures
Claire L. Wishart, Alanna G. Spiteri, Giuseppe Locatelli, et al.
Glia (2022) Vol. 71, Iss. 4, pp. 904-925
Open Access | Times Cited: 10
Signal recovery in single cell batch integration
Zhaojun Zhang, Divij Mathew, Tristan Lim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Disease-specific selective vulnerability and neuroimmune pathways in dementia revealed by single cell genomics
Jessica E. Rexach, Yuyan Cheng, Lawrence Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Cellular development and evolution of the mammalian cerebellum
Mari Sepp, Kevin Leiss, Ioannis Sarropoulos, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 14
scFormer: A Universal Representation Learning Approach for Single-Cell Data Using Transformers
Haotian Cui, Xiaoming Wang, Hassaan Maan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 9
Integration of scATAC-Seq with scRNA-Seq Data
Ivan Berest, Andrea Tangherloni
Methods in molecular biology (2022), pp. 293-310
Closed Access | Times Cited: 9
Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss
Chaozhong Liu, Linhua Wang, Zhandong Liu
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 5
Current and future perspectives of single-cell multi-omics technologies in cardiovascular research
Wilson Lek Wen Tan, Wei Qiang Seow, Angela Zhang, et al.
Nature Cardiovascular Research (2023) Vol. 2, Iss. 1, pp. 20-34
Closed Access | Times Cited: 5

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