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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data
Mehrbod Estaki, Lingjing Jiang, Nicholas A. Bokulich, et al.
Current Protocols in Bioinformatics (2020) Vol. 70, Iss. 1
Open Access | Times Cited: 367

Showing 1-25 of 367 citing articles:

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
Qiyun Zhu, Shi Huang, Antonio González, et al.
mSystems (2022) Vol. 7, Iss. 2
Open Access | Times Cited: 76
Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions
Nguyễn Nhật Nam, Hoang Dang Khoa, Kieu The Loan Trinh, et al.
Foods (2023) Vol. 12, Iss. 11, pp. 2140-2140
Open Access | Times Cited: 68
An open label, non-randomized study assessing a prebiotic fiber intervention in a small cohort of Parkinson’s disease participants
Deborah A. Hall, Robin M. Voigt, Thaisa M. Cantu-Jungles, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 61
The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiota
Patricia Bermudez-Martin, Jérôme A. J. Becker, Nicolas Caramello, et al.
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 102
COVID-19 pandemic reveals the peril of ignoring metadata standards
Lynn M. Schriml, Maria Chuvochina, Neil Davies, et al.
Scientific Data (2020) Vol. 7, Iss. 1
Open Access | Times Cited: 92
Depth-resolved microbial diversity and functional profiles of trichloroethylene-contaminated soils for Biolog EcoPlate-based biostimulation strategy
Suprokash Koner, Jung‐Sheng Chen, Bing‐Mu Hsu, et al.
Journal of Hazardous Materials (2021) Vol. 424, pp. 127266-127266
Closed Access | Times Cited: 80
DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions
Davide Francioli, Guillaume Lentendu, Simon Lewin, et al.
Microorganisms (2021) Vol. 9, Iss. 2, pp. 361-361
Open Access | Times Cited: 69
Ecological Role of Bacteria Involved in the Biogeochemical Cycles of Mangroves Based on Functional Genes Detected through GeoChip 5.0
Shanshan Meng, Tao Peng, Xiaobo Liu, et al.
mSphere (2022) Vol. 7, Iss. 1
Open Access | Times Cited: 63
metabaR: An r package for the evaluation and improvement of DNA metabarcoding data quality
Lucie Zinger, Clément Lionnet, Anne‐Sophie Benoiston, et al.
Methods in Ecology and Evolution (2021) Vol. 12, Iss. 4, pp. 586-592
Open Access | Times Cited: 61
Metagenomics and artificial intelligence in the context of human health
Atif Khurshid Wani, Priyanka Roy, Vijay Kumar, et al.
Infection Genetics and Evolution (2022) Vol. 100, pp. 105267-105267
Open Access | Times Cited: 50
A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies
Stephanie Rosales, Lindsay K. Huebner, James S. Evans, et al.
ISME Communications (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 37
Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota
Shimpei Kawamoto, Ken Uemura, Nozomi Hori, et al.
Nature Cell Biology (2023) Vol. 25, Iss. 6, pp. 865-876
Closed Access | Times Cited: 37
Significance of landfill microbial communities in biodegradation of polyethylene and nylon 6,6 microplastics
Neha Tiwari, Deenan Santhiya, Jai Gopal Sharma
Journal of Hazardous Materials (2023) Vol. 462, pp. 132786-132786
Closed Access | Times Cited: 29
Mucin glycans drive oral microbial community composition and function
Chloe M. Wu, Kelsey M. Wheeler, Gerardo Cárcamo‐Oyarce, et al.
npj Biofilms and Microbiomes (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 26
Changes in microbial community structure and yield responses with the use of nano-fertilizers of nitrogen and zinc in wheat–maize system
Pravin Kumar Upadhyay, Abir Dey, Vinod Kumar Singh, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 15
The spatiotemporal heterogeneity of microbial community assembly during pit fermentation of soy sauce flavor baijiu
Liang Yang, Huang Xiao-dong, Jiafeng Hu, et al.
Food Bioscience (2024) Vol. 61, pp. 104438-104438
Closed Access | Times Cited: 12
Dysbiosis Signature of Fecal Microbiota in Patients with Pancreatic Adenocarcinoma and Pancreatic Intraductal Papillary Mucinous Neoplasms
Theodoros Sidiropoulos, Nikolas Dovrolis, Hector Katifelis, et al.
Biomedicines (2024) Vol. 12, Iss. 5, pp. 1040-1040
Open Access | Times Cited: 9
Root-associated functional microbiome endemism facilitates heavy metal resilience and nutrient poor adaptation in native plants under serpentine driven edaphic challenges
Aslia Asif, Suprokash Koner, Bashir Hussain, et al.
Journal of Environmental Management (2025) Vol. 373, pp. 123826-123826
Closed Access | Times Cited: 1
Crucial role of early addition of Wickerhamiella versatilis in enhancing aroma formation during soy sauce fermentation
Yuichi Mizuno, Takashi Yoshimura, Kazutaka Sawada, et al.
Journal of Bioscience and Bioengineering (2025)
Closed Access | Times Cited: 1
Gut microbiome composition changes in obstructive sleep apnoea syndrome also in relation to excessive daytime sleepiness
Mariana Fernandes, Orazio Palmieri, Stefano Castellana, et al.
Brain Research Bulletin (2025), pp. 111251-111251
Open Access | Times Cited: 1
Unraveling the Mechanism of the Endophytic Bacterial Strain Pseudomonas oryzihabitans GDW1 in Enhancing Tomato Plant Growth Through Modulation of the Host Transcriptome and Bacteriome
Waqar Ahmed, Yan Wang, Wenxia Ji, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 5, pp. 1922-1922
Open Access | Times Cited: 1
Advancements in capturing and mining mass spectrometry data are transforming natural products research
Scott A. Jarmusch, Justin J. J. van der Hooft, Pieter C. Dorrestein, et al.
Natural Product Reports (2021) Vol. 38, Iss. 11, pp. 2066-2082
Open Access | Times Cited: 56
The Oral and Fecal Microbiota in a Canadian Cohort of Alzheimer’s Disease
Mihai Cirstea, Daniel Kliger, Abigale MacLellan, et al.
Journal of Alzheimer s Disease (2022) Vol. 87, Iss. 1, pp. 247-258
Closed Access | Times Cited: 34
ALDH2 deficiency increases susceptibility to binge alcohol-induced gut leakiness, endotoxemia, and acute liver injury in mice through the gut-liver axis
Wiramon Rungratanawanich, Yuhong Lin, Xin Wang, et al.
Redox Biology (2022) Vol. 59, pp. 102577-102577
Open Access | Times Cited: 33
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