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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

PASSerRank: Prediction of allosteric sites with learning to rank
Hao Tian, Sian Xiao, Xi Jiang, et al.
Journal of Computational Chemistry (2023) Vol. 44, Iss. 28, pp. 2223-2229
Open Access | Times Cited: 21

Showing 21 citing articles:

Machine learning approaches in predicting allosteric sites
Francho Nerín-Fonz, Zoe Cournia
Current Opinion in Structural Biology (2024) Vol. 85, pp. 102774-102774
Open Access | Times Cited: 18
PASSer: fast and accurate prediction of protein allosteric sites
Hao Tian, Sian Xiao, Xi Jiang, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W427-W431
Open Access | Times Cited: 36
Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variant Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms
Sian Xiao, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 16, pp. 5272-5296
Open Access | Times Cited: 31
From Deep Mutational Mapping of Allosteric Protein Landscapes to Deep Learning of Allostery and Hidden Allosteric Sites: Zooming in on “Allosteric Intersection” of Biochemical and Big Data Approaches
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta, et al.
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 9, pp. 7747-7747
Open Access | Times Cited: 11
Resistance to Allosteric Inhibitors
Ian R Outhwaite, Isabelle Kwan, Neil P. Shah, et al.
(2025)
Closed Access
The Evolving Landscape of Protein Allostery: From Computational and Experimental Perspectives
E. Srinivasan, Grigor Arakelov, Nikolay V. Dokholyan
Journal of Molecular Biology (2025), pp. 169060-169060
Closed Access
Resistance to Allosteric Inhibitors
Ian R Outhwaite, Isabelle Kwan, Ariel Leyte-Vidal, et al.
Journal of Molecular Biology (2025), pp. 169133-169133
Closed Access
AlloBench: A Data Set Pipeline for the Development and Benchmarking of Allosteric Site Prediction Tools
Dibyajyoti Maity, Baofu Qiao
ACS Omega (2025)
Open Access
Exploring Conformational Landscapes and Cryptic Binding Pockets in Distinct Functional States of the SARS-CoV-2 Omicron BA.1 and BA.2 Trimers: Mutation-Induced Modulation of Protein Dynamics and Network-Guided Prediction of Variant-Specific Allosteric Binding Sites
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
Viruses (2023) Vol. 15, Iss. 10, pp. 2009-2009
Open Access | Times Cited: 8
Comparative Analysis of Conformational Dynamics and Systematic Characterization of Cryptic Pockets in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB.1 Spike Complexes with the ACE2 Host Receptor: Confluence of Binding and Structural Plasticity in Mediating Networks of Conserved Allosteric Sites
Mohammed Alshahrani, Grace Gupta, Sian Xiao, et al.
Viruses (2023) Vol. 15, Iss. 10, pp. 2073-2073
Open Access | Times Cited: 8
Machine learning approaches in predicting allosteric sites
Francho Nerín-Fonz, Zoe Cournia
(2024)
Open Access | Times Cited: 2
Exploring Binding Pockets in the Conformational States of the SARS-CoV-2 Spike Trimers for the Screening of Allosteric Inhibitors Using Molecular Simulations and Ensemble-Based Ligand Docking
Grace Gupta, Gennady M. Verkhivker
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 9, pp. 4955-4955
Open Access | Times Cited: 2
MEF-AlloSite: an accurate and robust Multimodel Ensemble Feature selection for the Allosteric Site identification model
Sadettin Yavuz Ugurlu, David W. McDonald, Shan He
Journal of Cheminformatics (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 2
Advances in structure-based allosteric drug design
Rui Li, Xinheng He, Chengwei Wu, et al.
Current Opinion in Structural Biology (2024) Vol. 90, pp. 102974-102974
Closed Access | Times Cited: 2
Matching Problem Statements to Editorials in Competitive Programming
Ion George Dinu, Marian Cristian Mihăescu, Traian Rebedea
(2024), pp. 171-175
Closed Access
Protein Allosteric Site Identification Using Machine Learning and Per Amino Acid Residue Reported Internal Protein Nanoenvironment Descriptors
Folorunsho Bright Omage, José Augusto Salim, Ivan Mazoni, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 3907-3919
Open Access
RankMHC: Learning to Rank Class-I Peptide-MHC Structural Models
Romanos Fasoulis, Γεώργιος Παλιούρας, Lydia E. Kavraki
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 23, pp. 8729-8742
Closed Access
Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variants Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms
Sian Xiao, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Ensemble-Based Modeling of the SARS-CoV-2 Omicron BA.1 and BA.2 Spike Trimers and Systematic Characterization of Cryptic Binding Pockets in Distinct Functional States : Emergence of Conformation-Sensitive and Variant-Specific Allosteric Binding Sites
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Examining Functional Linkages Between Conformational Dynamics, Protein Stability and Evolution of Cryptic Binding Pockets in the SARS-CoV-2 Omicron Spike Complexes with the ACE2 Host Receptor: Recombinant Omicron Variants Mediate Variability of Conserved Allosteric Sites and Binding Epitopes
Mohammed Alshahrani, Grace Gupta, Sian Xiao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
A Protein Structure Enhanced Pre-training Model for Allosteric Site Detection
Qinfei Lv, X.H. Zhang, Xin Jiang, et al.
(2023), pp. 1184-1191
Closed Access
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