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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition
Marc F. Lensink, Sameer Velankar, Shoshana J. Wodak
Proteins Structure Function and Bioinformatics (2016) Vol. 85, Iss. 3, pp. 359-377
Open Access | Times Cited: 221

Showing 1-25 of 221 citing articles:

HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy
Yumeng Yan, Di Zhang, Pei Zhou, et al.
Nucleic Acids Research (2017) Vol. 45, Iss. W1, pp. W365-W373
Open Access | Times Cited: 1018
Harnessing protein folding neural networks for peptide–protein docking
Tomer Tsaban, Julia K. Varga, Orly Avraham, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 894
A Comprehensive Review on Current Advances in Peptide Drug Development and Design
Andy Chi-Lung Lee, Janelle L. Harris, Kum Kum Khanna, et al.
International Journal of Molecular Sciences (2019) Vol. 20, Iss. 10, pp. 2383-2383
Open Access | Times Cited: 603
Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning
Pablo Gaínza, Freyr Sverrisson, Federico Monti, et al.
Nature Methods (2019) Vol. 17, Iss. 2, pp. 184-192
Open Access | Times Cited: 598
Performance and Its Limits in Rigid Body Protein-Protein Docking
Israel Desta, Kathryn A. Porter, Bing Xia, et al.
Structure (2020) Vol. 28, Iss. 9, pp. 1071-1081.e3
Open Access | Times Cited: 544
HPEPDOCK: a web server for blind peptide–protein docking based on a hierarchical algorithm
Pei Zhou, Bowen Jin, Hao Li, et al.
Nucleic Acids Research (2018) Vol. 46, Iss. W1, pp. W443-W450
Open Access | Times Cited: 463
Protein–peptide docking: opportunities and challenges
Maciej Paweł Ciemny, Mateusz Kurciński, Karol Kamel, et al.
Drug Discovery Today (2018) Vol. 23, Iss. 8, pp. 1530-1537
Open Access | Times Cited: 262
Large-Scale Assessment of Binding Free Energy Calculations in Active Drug Discovery Projects
Christina Schindler, Hannah M. Baumann, Andreas Blum, et al.
Journal of Chemical Information and Modeling (2020) Vol. 60, Iss. 11, pp. 5457-5474
Closed Access | Times Cited: 225
Highly Flexible Ligand Docking: Benchmarking of the DockThor Program on the LEADS-PEP Protein–Peptide Data Set
Karina B. Santos, Isabella Alvim Guedes, Ana L. M. Karl, et al.
Journal of Chemical Information and Modeling (2020) Vol. 60, Iss. 2, pp. 667-683
Closed Access | Times Cited: 220
Cross-Linking Mass Spectrometry for Investigating Protein Conformations and Protein–Protein Interactions─A Method for All Seasons
Lolita Piersimoni, Panagiotis L. Kastritis, Christian Arlt, et al.
Chemical Reviews (2021) Vol. 122, Iss. 8, pp. 7500-7531
Open Access | Times Cited: 193
Computational approaches to therapeutic antibody design: established methods and emerging trends
Richard A. Norman, Francesco Ambrosetti, Alexandre M. J. J. Bonvin, et al.
Briefings in Bioinformatics (2019) Vol. 21, Iss. 5, pp. 1549-1567
Open Access | Times Cited: 175
Computational prediction of protein–protein binding affinities
Till Siebenmorgen, Martin Zacharias
Wiley Interdisciplinary Reviews Computational Molecular Science (2019) Vol. 10, Iss. 3
Open Access | Times Cited: 150
De novo design of protein interactions with learned surface fingerprints
Pablo Gaínza, Sarah Wehrle, Alexandra Van Hall‐Beauvais, et al.
Nature (2023) Vol. 617, Iss. 7959, pp. 176-184
Open Access | Times Cited: 121
From interaction networks to interfaces, scanning intrinsically disordered regions using AlphaFold2
Hélène Bret, Jinmei Gao, Diego Javier Zea, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 49
Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
Marc F. Lensink, Guillaume Brysbaert, Nessim Raouraoua, et al.
Proteins Structure Function and Bioinformatics (2023) Vol. 91, Iss. 12, pp. 1658-1683
Open Access | Times Cited: 45
Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes
Shoshana J. Wodak, Sándor Vajda, Marc F. Lensink, et al.
Annual Review of Biophysics (2023) Vol. 52, Iss. 1, pp. 183-206
Open Access | Times Cited: 42
Computational Approaches to Predict Protein–Protein Interactions in Crowded Cellular Environments
Greta Grassmann, Mattia Miotto, Fausta Desantis, et al.
Chemical Reviews (2024) Vol. 124, Iss. 7, pp. 3932-3977
Open Access | Times Cited: 34
Leveraging machine learning models for peptide–protein interaction prediction
Yin Song, Xuenan Mi, Diwakar Shukla
RSC Chemical Biology (2024) Vol. 5, Iss. 5, pp. 401-417
Open Access | Times Cited: 21
Efficient flexible backbone protein–protein docking for challenging targets
Nicholas Marze, Shourya S. Roy Burman, William Sheffler, et al.
Bioinformatics (2018) Vol. 34, Iss. 20, pp. 3461-3469
Open Access | Times Cited: 161
High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
Nawsad Alam, Oriel Goldstein, Bing Xia, et al.
PLoS Computational Biology (2017) Vol. 13, Iss. 12, pp. e1005905-e1005905
Open Access | Times Cited: 144
ComplexContact: a web server for inter-protein contact prediction using deep learning
Hong Zeng, Sheng Wang, Tianming Zhou, et al.
Nucleic Acids Research (2018) Vol. 46, Iss. W1, pp. W432-W437
Open Access | Times Cited: 139
ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT
Kathryn A. Porter, Bing Xia, Dmitri Beglov, et al.
Bioinformatics (2017) Vol. 33, Iss. 20, pp. 3299-3301
Open Access | Times Cited: 130
Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition
Marc F. Lensink, Nurul Nadzirin, Sameer Velankar, et al.
Proteins Structure Function and Bioinformatics (2019) Vol. 88, Iss. 8, pp. 916-938
Open Access | Times Cited: 127
Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment
Marc F. Lensink, Guillaume Brysbaert, Nurul Nadzirin, et al.
Proteins Structure Function and Bioinformatics (2019) Vol. 87, Iss. 12, pp. 1200-1221
Open Access | Times Cited: 123
Third generation antibody discovery methods:in silicorational design
Pietro Sormanni, Francesco A. Aprile, Michele Vendruscolo
Chemical Society Reviews (2018) Vol. 47, Iss. 24, pp. 9137-9157
Closed Access | Times Cited: 112
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