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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Hi-C analysis: from data generation to integration
Koustav Pal, Mattia Forcato, Francesco Ferrari
Biophysical Reviews (2018) Vol. 11, Iss. 1, pp. 67-78
Open Access | Times Cited: 79

Showing 1-25 of 79 citing articles:

Understanding 3D genome organization by multidisciplinary methods
Ivana Jerković, Giacomo Cavalli
Nature Reviews Molecular Cell Biology (2021) Vol. 22, Iss. 8, pp. 511-528
Open Access | Times Cited: 299
FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
Kai Kruse, Clemens B. Hug, Juan M. Vaquerizas
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 171
Recent Advances in Generative Adversarial Networks for Gene Expression Data: A Comprehensive Review
Minhyeok Lee
Mathematics (2023) Vol. 11, Iss. 14, pp. 3055-3055
Open Access | Times Cited: 31
Challenges and opportunities of strain diversity in gut microbiome research
Benjamin Anderson, Jordan E. Bisanz
Frontiers in Microbiology (2023) Vol. 14
Open Access | Times Cited: 23
Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
Fan Cao, Yu Zhang, Yichao Cai, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 43
Chromosome-Level Genome Assembly of the Blue Mussel Mytilus chilensis Reveals Molecular Signatures Facing the Marine Environment
Cristian Gallardo‐Escárate, Valentina Valenzuela-Muñóz, Gustavo Núñez-Acuña, et al.
Genes (2023) Vol. 14, Iss. 4, pp. 876-876
Open Access | Times Cited: 19
Examining the biological mechanisms of human mental disorders resulting from gene-environment interdependence using novel functional genomic approaches
Patrícia Pelufo Silveira, Michael J. Meaney
Neurobiology of Disease (2023) Vol. 178, pp. 106008-106008
Open Access | Times Cited: 14
Learning the distribution of single-cell chromosome conformations in bacteria reveals emergent order across genomic scales
Joris J. B. Messelink, Muriel C. F. van Teeseling, Jacqueline Janssen, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 29
“Omics” data unveil early molecular response underlying limb regeneration in the Chinese mitten crab, Eriocheir sinensis
Jun Wang, Xiaowen Chen, Xin Hou, et al.
Science Advances (2022) Vol. 8, Iss. 37
Open Access | Times Cited: 21
Analysis of long-range chromatin contacts, compartments and looping between mouse embryonic stem cells, lens epithelium and lens fibers
Michael Camerino, William K. Chang, Aleš Cvekl
Epigenetics & Chromatin (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 4
Computational Biology Solutions to Identify Enhancers-target Gene Pairs
Judith Mary Hariprakash, Francesco Ferrari
Computational and Structural Biotechnology Journal (2019) Vol. 17, pp. 821-831
Open Access | Times Cited: 35
Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi by SMRT sequencing and Hi-C analysis
Cristian Gallardo‐Escárate, Valentina Valenzuela-Muñóz, Gustavo Núñez-Acuña, et al.
Scientific Data (2021) Vol. 8, Iss. 1
Open Access | Times Cited: 25
Predicting 3D chromatin interactions from DNA sequence using Deep Learning
Robert S. Piecyk, Luca Schlegel, Frank Johannes
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 3439-3448
Open Access | Times Cited: 17
The shape of chromatin: insights from computational recognition of geometric patterns in Hi-C data
Andrea Raffo, Jonas Paulsen
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 10
Significance in scale space for Hi-C data
Rui Liu, Zhengwu Zhang, Hyejung Won, et al.
Bioinformatics (2025) Vol. 41, Iss. 3
Open Access
Dynamic Chromatin Structure and Epigenetics Control the Fate of Malaria Parasites
Thomas Hollin, Mohit Gupta, Todd Lenz, et al.
Trends in Genetics (2020) Vol. 37, Iss. 1, pp. 73-85
Open Access | Times Cited: 26
3D genome organization links non-coding disease-associated variants to genes
Gisela Orozco, Stefan Schoenfelder, Nicolas J. Walker, et al.
Frontiers in Cell and Developmental Biology (2022) Vol. 10
Open Access | Times Cited: 15
Epigenetic programming of stochastic olfactory receptor choice
Nusrath Yusuf, Kevin D. Monahan
genesis (2024) Vol. 62, Iss. 2
Open Access | Times Cited: 3
3D Chromosomal Landscapes in Hematopoiesis and Immunity
Andreas Kloetgen, Palaniraja Thandapani, Aristotelis Tsirigos, et al.
Trends in Immunology (2019) Vol. 40, Iss. 9, pp. 809-824
Open Access | Times Cited: 23
Hidden network generating rules from partially observed complex networks
Ruochen Yang, Frédéric Sala, Paul Bogdan
Communications Physics (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 20
Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variants
Wujuan Zhong, Weifang Liu, Jiawen Chen, et al.
Frontiers in Cell and Developmental Biology (2022) Vol. 10
Open Access | Times Cited: 14
Spatial mapping of the DNA adducts in cancer
Kimiko L. Krieger, Elise Mann, Kevin J. Lee, et al.
DNA repair (2023) Vol. 128, pp. 103529-103529
Open Access | Times Cited: 7
A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction
Anup Kumar Halder, Abhishek Agarwal, Karolina Jodkowska, et al.
Briefings in Functional Genomics (2024)
Closed Access | Times Cited: 2
HiCDiff: single-cell Hi-C data denoising with diffusion models
Yanli Wang, Jianlin Cheng
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 2
HiCeekR: A Novel Shiny App for Hi-C Data Analysis
Lucio Di Filippo, Dario Righelli, Miriam Gagliardi, et al.
Frontiers in Genetics (2019) Vol. 10
Open Access | Times Cited: 18
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