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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas
Jennifer Rood, Anna Hupalowska, Aviv Regev
Cell (2024) Vol. 187, Iss. 17, pp. 4520-4545
Closed Access | Times Cited: 21

Showing 21 citing articles:

Deep learning-based predictions of gene perturbation effects do not yet outperform simple linear methods
Constantin Ahlmann-Eltze, Wolfgang Huber, Simon Anders
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
Massively parallel in vivo Perturb-seq screening
Xinhe Zheng, Patrick C. Thompson, Cassandra White, et al.
Nature Protocols (2025)
Closed Access | Times Cited: 1
Machine learning to dissect perturbations in complex cellular systems
Pablo Monfort-Lanzas, Katja Rungger, Leonie Madersbacher, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 832-842
Open Access | Times Cited: 1
Causal modeling of gene effects from regulators to programs to traits: integration of genetic associations and Perturb-seq
Mineto Ota, Jeffrey P. Spence, Tony Zeng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
System level network data and models attack cancer drug resistance
Márk Kerestély, Dávid Keresztes, Levente Szarka, et al.
British Journal of Pharmacology (2025)
Open Access
Unifying Genetic and Chemical Perturbagen Representation through a Hybrid Deep Learning Framework
Yiming Li, Jun Zhu, Linjing Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Aggressive Serous Carcinomas of the Female Reproductive Tract: Cancer-Prone Cell States and Genetic Drivers
Daryl J. Phuong, Matalin G. Pirtz, Coulter Q. Ralston, et al.
Cancers (2025) Vol. 17, Iss. 4, pp. 604-604
Open Access
Consequences of training data composition for deep learning models in single-cell biology
Ajay Nadig, Akshaya Thoutam, Madeline Hughes, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Adapting systems biology to address the complexity of human disease in the single-cell era
David S. Fischer, Martin Arreola Villanueva, Peter Winter, et al.
Nature Reviews Genetics (2025)
Closed Access
Quantifying and interpreting biologically meaningful spatial signatures within tumor microenvironments
Siyu Jing, He-qi Wang, Ping Lin, et al.
npj Precision Oncology (2025) Vol. 9, Iss. 1
Open Access
Unraveling the future of genomics: CRISPR, single-cell omics, and the applications in cancer and immunology
A Vipin Menon, Bicna Song, Lumen Chao, et al.
Frontiers in Genome Editing (2025) Vol. 7
Open Access
Transcriptome-wide analysis of differential expression in perturbation atlases
Ajay Nadig, Joseph M. Replogle, Angela N. Pogson, et al.
Nature Genetics (2025)
Closed Access
CellFlow enables generative single-cell phenotype modeling with flow matching
Leo C. Stein, Jonas Simon Fleck, Daniil Bobrovskiy, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
A platform for multimodal in vivo pooled genetic screens reveals regulators of liver function
Reuben A. Saunders, William E. Allen, Xingjie Pan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction
Yiqun T. Chen, James Zou
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
LAT encodes T cell activation pathway balance
Adam J. Rubin, Tyler T. Dao, Amelia V. Schueppert, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS
Sami Nourreddine, Yesh Doctor, Amir Dailamy, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Data-guided direct reprogramming of human fibroblasts into the hematopoietic lineage
Cooper Stansbury, Jillian Cwycyshyn, Joshua Pickard, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
A New Era of Functional Experimentation in Human Hematopoiesis and Leukemia Research
Thomas Köhnke, Yang Feng, Ravindra Majeti
Experimental Hematology (2024), pp. 104652-104652
Closed Access
AI: A transformative opportunity in cell biology
Ambrose Carr, Jonah Cool, Theofanis Karaletsos, et al.
Molecular Biology of the Cell (2024) Vol. 35, Iss. 12
Closed Access
Scaling Dense Representations for Single Cell with Transcriptome-Scale Context
Nicholas Ho, Caleb N. Ellington, Jing Hou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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