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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies
Christopher Koch, Jay H. Konieczka, Toni Delorey, et al.
Cell Systems (2017) Vol. 4, Iss. 5, pp. 543-558.e8
Open Access | Times Cited: 48

Showing 1-25 of 48 citing articles:

Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets
Shilu Zhang, Saptarshi Pyne, Stefan Pietrzak, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 61
Gene regulatory network inference resources: A practical overview
Daniele Mercatelli, Laura Scalambra, Luca Triboli, et al.
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms (2019) Vol. 1863, Iss. 6, pp. 194430-194430
Closed Access | Times Cited: 134
Modularity, criticality, and evolvability of a developmental gene regulatory network
Berta Verd, Nick Monk, Johannes Jaeger
eLife (2019) Vol. 8
Open Access | Times Cited: 94
Fish Evo‐Devo: Moving Toward Species‐Specific and Knowledge‐Based Interactome
Ehsan Pashay Ahi
Journal of Experimental Zoology Part B Molecular and Developmental Evolution (2025)
Open Access | Times Cited: 1
Multi-study inference of regulatory networks for more accurate models of gene regulation
Dayanne M. Castro, Nicholas R. de Veaux, Emily R. Miraldi, et al.
PLoS Computational Biology (2019) Vol. 15, Iss. 1, pp. e1006591-e1006591
Open Access | Times Cited: 65
Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
Katie Ovens, B. Frank Eames, Ian McQuillan
Frontiers in Genetics (2021) Vol. 12
Open Access | Times Cited: 45
The Evolutionary Biology of Species
Timothy G. Barraclough
Oxford University Press eBooks (2019)
Closed Access | Times Cited: 46
Towards a Dynamic Interaction Network of Life to unify and expand the evolutionary theory
Éric Bapteste, Philippe Huneman
BMC Biology (2018) Vol. 16, Iss. 1
Open Access | Times Cited: 33
Evolution of regulatory networks associated with traits under selection in cichlids
Tarang K. Mehta, Christopher Koch, Will Nash, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 20
Networks Consolidate the Core Concepts of Evolution by Natural Selection
François Papale, Jordane Saget, Éric Bapteste
Trends in Microbiology (2019) Vol. 28, Iss. 4, pp. 254-265
Open Access | Times Cited: 20
Ancestral reconstruction of protein interaction networks
Benjamin J. Liebeskind, Richard W. Aldrich, Edward M. Marcotte
PLoS Computational Biology (2019) Vol. 15, Iss. 10, pp. e1007396-e1007396
Open Access | Times Cited: 16
Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development
Deborah Chasman, Nisha Iyer, Alireza Fotuhi Siahpirani, et al.
Cell Systems (2019) Vol. 9, Iss. 2, pp. 167-186.e12
Open Access | Times Cited: 15
Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response
Rylee K. Hackley, Amy K. Schmid
Journal of Molecular Biology (2019) Vol. 431, Iss. 20, pp. 4147-4166
Open Access | Times Cited: 14
Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach
Alexandre Rafael Lenz, Edgardo Galán-Vásquez, E. Balbinot, et al.
Frontiers in Microbiology (2020) Vol. 11
Open Access | Times Cited: 14
Modeling the evolution of interconnected processes: It is the song and the singers
Éric Bapteste, François Papale
BioEssays (2020) Vol. 43, Iss. 1
Open Access | Times Cited: 12
Entangled adaptive landscapes facilitate the evolution of gene regulation by exaptation
Cauã Antunes Westmann, Leander Goldbach, Andreas Wagner
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Modularity, criticality, and evolvability of a developmental gene regulatory network
Berta Verd, Nick Monk, Johannes Jaeger
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 9
Exomic and transcriptomic alterations of hereditary gingival fibromatosis
Seong Kyu Han, JungHo Kong, Sanguk Kim, et al.
Oral Diseases (2019) Vol. 25, Iss. 5, pp. 1374-1383
Closed Access | Times Cited: 9
Comparative Transcriptomics Highlights New Features of the Iron Starvation Response in the Human Pathogen Candida glabrata
Médine Benchouaia, Hugues Ripoche, Mariam Sissoko, et al.
Frontiers in Microbiology (2018) Vol. 9
Open Access | Times Cited: 7
Phylosystemics: Merging Phylogenomics, Systems Biology, and Ecology to Study Evolution
Andrew Watson, Michel Habib, Éric Bapteste
Trends in Microbiology (2019) Vol. 28, Iss. 3, pp. 176-190
Open Access | Times Cited: 6
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
Alireza Fotuhi Siahpirani, Sara Knaack, Deborah Chasman, et al.
Genome Research (2022) Vol. 32, Iss. 7, pp. 1367-1384
Open Access | Times Cited: 4
Evolution of regulatory networks associated with traits under selection in cichlids
Tarang K. Mehta, Christopher Koch, Will Nash, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 5
Multi-study inference of regulatory networks for more accurate models of gene regulation
Dayanne M. Castro, Nicholas R. de Veaux, Emily R. Miraldi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 4
Wiring between close nodes in molecular networks evolves more quickly than between distant nodes
Alejandro Gil-Gómez, Joshua S. Rest
Molecular Biology and Evolution (2024) Vol. 41, Iss. 5
Open Access
Predicting evolution in diverse communities
Timothy G. Barraclough
Oxford University Press eBooks (2019), pp. 167-188
Closed Access | Times Cited: 2
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