OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces
Atul Deshpande, Melanie Loth, Dimitrios N. Sidiropoulos, et al.
Cell Systems (2023) Vol. 14, Iss. 4, pp. 285-301.e4
Open Access | Times Cited: 24
Atul Deshpande, Melanie Loth, Dimitrios N. Sidiropoulos, et al.
Cell Systems (2023) Vol. 14, Iss. 4, pp. 285-301.e4
Open Access | Times Cited: 24
Showing 24 citing articles:
Unveiling the mechanism of micro-and-nano plastic phytotoxicity on terrestrial plants: A comprehensive review of omics approaches
Asad Jamil, Ambreen Ahmad, Muhammad Moeen-Ud-Din, et al.
Environment International (2025) Vol. 195, pp. 109257-109257
Open Access | Times Cited: 2
Asad Jamil, Ambreen Ahmad, Muhammad Moeen-Ud-Din, et al.
Environment International (2025) Vol. 195, pp. 109257-109257
Open Access | Times Cited: 2
Tumor microenvironment: recent advances in understanding and its role in modulating cancer therapies
Disha D. Shah, Mehul R. Chorawala, Neha R. Raghani, et al.
Medical Oncology (2025) Vol. 42, Iss. 4
Closed Access | Times Cited: 2
Disha D. Shah, Mehul R. Chorawala, Neha R. Raghani, et al.
Medical Oncology (2025) Vol. 42, Iss. 4
Closed Access | Times Cited: 2
Transfer Learning Reveals Cancer-Associated Fibroblasts Are Associated with Epithelial–Mesenchymal Transition and Inflammation in Cancer Cells in Pancreatic Ductal Adenocarcinoma
Samantha Guinn, Benedict Kinny‐Köster, Joseph A. Tandurella, et al.
Cancer Research (2024) Vol. 84, Iss. 9, pp. 1517-1533
Open Access | Times Cited: 9
Samantha Guinn, Benedict Kinny‐Köster, Joseph A. Tandurella, et al.
Cancer Research (2024) Vol. 84, Iss. 9, pp. 1517-1533
Open Access | Times Cited: 9
Integration of Clinical Trial Spatial Multiomics Analysis and Virtual Clinical Trials Enables Immunotherapy Response Prediction and Biomarker Discovery
Shuming Zhang, Atul Deshpande, Babita K. Verma, et al.
Cancer Research (2024) Vol. 84, Iss. 16, pp. 2734-2748
Closed Access | Times Cited: 8
Shuming Zhang, Atul Deshpande, Babita K. Verma, et al.
Cancer Research (2024) Vol. 84, Iss. 16, pp. 2734-2748
Closed Access | Times Cited: 8
Cellular Dynamics of Tumor Microenvironment Driving Immunotherapy Resistance in Non-Small-Cell Lung Carcinoma
Shujie Huang, Jeff Yat‐Fai Chung, Chunjie Li, et al.
Cancer Letters (2024), pp. 217272-217272
Closed Access | Times Cited: 8
Shujie Huang, Jeff Yat‐Fai Chung, Chunjie Li, et al.
Cancer Letters (2024), pp. 217272-217272
Closed Access | Times Cited: 8
Leveraging multi-omics data to empower quantitative systems pharmacology in immuno-oncology
Theinmozhi Arulraj, Hanwen Wang, Alberto Ippolito, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 7
Theinmozhi Arulraj, Hanwen Wang, Alberto Ippolito, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 7
Differential gene expression analysis of spatial transcriptomic experiments using spatial mixed models
Oscar E. Ospina, Alex C. Soupir, Roberto Manjarres-Betancur, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 7
Oscar E. Ospina, Alex C. Soupir, Roberto Manjarres-Betancur, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 7
Magnetic Resonance Imaging–Based Assessment of Pancreatic Fat Strongly Correlates With Histology-Based Assessment of Pancreas Composition
Ashley Kiemen, Mohamad Dbouk, Elizabeth Abou Diwan, et al.
Pancreas (2024) Vol. 53, Iss. 2, pp. e180-e186
Open Access | Times Cited: 6
Ashley Kiemen, Mohamad Dbouk, Elizabeth Abou Diwan, et al.
Pancreas (2024) Vol. 53, Iss. 2, pp. e180-e186
Open Access | Times Cited: 6
Computational methods and biomarker discovery strategies for spatial proteomics: a review in immuno-oncology.
Haoyang Mi, Shamilene Sivagnanam, Won Jin Ho, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 5
Haoyang Mi, Shamilene Sivagnanam, Won Jin Ho, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 5
CODAvision: best practices and a user-friendly interface for rapid, customizable segmentation of medical images
Valentina Matos-Romero, Jaime Gómez-Becerril, André Forjaz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Valentina Matos-Romero, Jaime Gómez-Becerril, André Forjaz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Mapping the topography of spatial gene expression with interpretable deep learning
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
Complementing Cell Taxonomies with a Multicellular Analysis of Tissues
Ricardo O. Ramirez Flores, Philipp Schäfer, Leonie Küchenhoff, et al.
Physiology (2024) Vol. 39, Iss. 3, pp. 129-141
Open Access | Times Cited: 3
Ricardo O. Ramirez Flores, Philipp Schäfer, Leonie Küchenhoff, et al.
Physiology (2024) Vol. 39, Iss. 3, pp. 129-141
Open Access | Times Cited: 3
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Jeanette Johnson, Ashley Tsang, Jacob T. Mitchell, et al.
Nature Protocols (2023) Vol. 18, Iss. 12, pp. 3690-3731
Open Access | Times Cited: 7
Jeanette Johnson, Ashley Tsang, Jacob T. Mitchell, et al.
Nature Protocols (2023) Vol. 18, Iss. 12, pp. 3690-3731
Open Access | Times Cited: 7
STimage-1K4M: A histopathology image-gene expression dataset for spatial transcriptomics.
Jiawen Chen, Muqing Zhou, Wenrong Wu, et al.
arXiv (Cornell University) (2024)
Open Access | Times Cited: 2
Jiawen Chen, Muqing Zhou, Wenrong Wu, et al.
arXiv (Cornell University) (2024)
Open Access | Times Cited: 2
HMGB2 drives tumor progression and shapes the immunosuppressive microenvironment in hepatocellular carcinoma: insights from multi-omics analysis
Yanzhu Chen, Zhishang Meng, Zuo‐Lin Xiang
Frontiers in Immunology (2024) Vol. 15
Open Access | Times Cited: 2
Yanzhu Chen, Zhishang Meng, Zuo‐Lin Xiang
Frontiers in Immunology (2024) Vol. 15
Open Access | Times Cited: 2
Informing virtual clinical trials of hepatocellular carcinoma with spatial multi-omics analysis of a human neoadjuvant immunotherapy clinical trial
Shuming Zhang, Atul Deshpande, Babita K. Verma, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Shuming Zhang, Atul Deshpande, Babita K. Verma, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Systems immunology spanning tumors, lymph nodes, and periphery
Dimitrios N. Sidiropoulos, Won Jin Ho, Elizabeth M. Jaffee, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 12, pp. 100670-100670
Open Access | Times Cited: 5
Dimitrios N. Sidiropoulos, Won Jin Ho, Elizabeth M. Jaffee, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 12, pp. 100670-100670
Open Access | Times Cited: 5
3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure
Ashley Kiemen, Cristina Almagro-Pérez, Valentina Matos, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Ashley Kiemen, Cristina Almagro-Pérez, Valentina Matos, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
The MCIB Model: A Novel Theory for Describing the Spatial Heterogeneity of the Tumor Microenvironment
Minghao Guo, Yinan Sun, Xiaohui Wang, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 19, pp. 10486-10486
Open Access | Times Cited: 1
Minghao Guo, Yinan Sun, Xiaohui Wang, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 19, pp. 10486-10486
Open Access | Times Cited: 1
Addressing the mean-variance relationship in spatially resolved transcriptomics data with spoon
Kinnary H Shah, Boyi Guo, Stephanie C. Hicks
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Kinnary H Shah, Boyi Guo, Stephanie C. Hicks
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Image stitching algorithm for super-resolution localization microscopy combined with fluorescence noise prior
Yanzhu Chen, Zhiwang Xu, Shijie Ren, et al.
Biomedical Optics Express (2024) Vol. 15, Iss. 9, pp. 5411-5411
Open Access
Yanzhu Chen, Zhiwang Xu, Shijie Ren, et al.
Biomedical Optics Express (2024) Vol. 15, Iss. 9, pp. 5411-5411
Open Access
Spatial multi-omics reveal intratumoral humoral immunity niches associated with tertiary lymphoid structures in pancreatic cancer immunotherapy pathologic responders
Dimitrios N. Sidiropoulos, Sarah M. Shin, M. Wetzel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
Dimitrios N. Sidiropoulos, Sarah M. Shin, M. Wetzel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
A phenotypic drug discovery approach by latent interaction in deep learning
Billy T.W. Yu
Royal Society Open Science (2024) Vol. 11, Iss. 10
Open Access
Billy T.W. Yu
Royal Society Open Science (2024) Vol. 11, Iss. 10
Open Access
Integrative analyses of bulk, single-cell and spatial transcriptomics identified diabetes mellitus-related signature as a prognostic factor in pancreatic adenocarcinoma
Le Tang, Tongji Xie, Guangyu Fan, et al.
Research Square (Research Square) (2023)
Open Access
Le Tang, Tongji Xie, Guangyu Fan, et al.
Research Square (Research Square) (2023)
Open Access
