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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Inference of cell type specific regulatory networks on mammalian lineages
Deborah Chasman, Sushmita Roy
Current Opinion in Systems Biology (2017) Vol. 2, pp. 130-139
Open Access | Times Cited: 21

Showing 21 citing articles:

Subtype-specific regulatory network rewiring in acute myeloid leukemia
Salam A. Assi, Maria Rosaria Imperato, Daniel Coleman, et al.
Nature Genetics (2018) Vol. 51, Iss. 1, pp. 151-162
Open Access | Times Cited: 175
Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data
Marco Stock, Corinna Losert, M Zambon, et al.
Molecular Systems Biology (2025)
Closed Access | Times Cited: 1
NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity
Kenong Su, Ataur Katebi, Vivek Kohar, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 31
CLARIFY: cell–cell interaction and gene regulatory network refinement from spatially resolved transcriptomics
Mihir Bafna, Hechen Li, Xiuwei Zhang
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i484-i493
Open Access | Times Cited: 18
ChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene regulatory elements
Andrew Perez, Isabel N. Goronzy, Mario R. Blanco, et al.
Nature Genetics (2024)
Closed Access | Times Cited: 3
Computational approaches to understand transcription regulation in development
Maarten van der Sande, Siebren Frölich, Simon J. van Heeringen
Biochemical Society Transactions (2023) Vol. 51, Iss. 1, pp. 1-12
Open Access | Times Cited: 7
Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development
Deborah Chasman, Nisha Iyer, Alireza Fotuhi Siahpirani, et al.
Cell Systems (2019) Vol. 9, Iss. 2, pp. 167-186.e12
Open Access | Times Cited: 15
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, et al.
Bioinformatics (2021) Vol. 38, Iss. 5, pp. 1403-1410
Open Access | Times Cited: 11
Intracellular and Intercellular Gene Regulatory Network Inference From Time-Course Individual RNA-Seq
Makoto Kashima, Yuki Shida, Takashi Yamashiro, et al.
Frontiers in Bioinformatics (2021) Vol. 1
Open Access | Times Cited: 9
Bioengineering the human spinal cord
Nisha Iyer, Randolph S. Ashton
Frontiers in Cell and Developmental Biology (2022) Vol. 10
Open Access | Times Cited: 6
ChIP-DIP: A multiplexed method for mapping hundreds of proteins to DNA uncovers diverse regulatory elements controlling gene expression
Andrew Perez, Isabel N. Goronzy, Mario R. Blanco, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity
Kenong Su, Ataur Katebi, Vivek Kohar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 5
Topological structure analysis of chromatin interaction networks
Juris Víksna, Gatis Melkus, Edgars Celms, et al.
BMC Bioinformatics (2019) Vol. 20, Iss. S23
Open Access | Times Cited: 6
Transcriptional signatures of cell-cell interactions are dependent on cellular context
Brendan T. Innes, Gary D. Bader
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 4
Susceptibility identification for seasonal influenza A/H3N2 based on baseline blood transcriptome
Jing Tang, Qiumei Xu, Kang Tang, et al.
Frontiers in Immunology (2023) Vol. 13
Open Access | Times Cited: 1
Deciphering gene regulatory programs underlying functionally divergent naive T cell subsets
Hongya Zhu, Ya Jiang, Adrian J. McNairn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Is Autogenous Posttranscriptional Gene Regulation Common?
Gary D. Stormo
RNA technologies (2018), pp. 217-227
Closed Access | Times Cited: 1
Sample-wise unsupervised deconvolution of complex tissues
Lulu Chen, Chia-Hsiang Lin, Chiung-Ting Wu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 1
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Closed Access | Times Cited: 1
Faculty Opinions recommendation of Subtype-specific regulatory network rewiring in acute myeloid leukemia.
Stephen D. Nimer, Pierre-Jacques Hamard
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature (2019)
Open Access
Intracellular and intercellular gene regulatory networks inference from time-course individual RNA-Seq
Makoto Kashima, Yuki Shida, Takashi Yamashiro, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access
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