OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Room for improvement in the initial martini 3 parameterization of peptide interactions
J. Karl Spinti, Fernando Neiva Nunes, Manuel N. Melo
Chemical Physics Letters (2023) Vol. 819, pp. 140436-140436
Open Access | Times Cited: 27
J. Karl Spinti, Fernando Neiva Nunes, Manuel N. Melo
Chemical Physics Letters (2023) Vol. 819, pp. 140436-140436
Open Access | Times Cited: 27
Showing 1-25 of 27 citing articles:
GōMartini 3: From large conformational changes in proteins to environmental bias corrections
Paulo C. T. Souza, Luís Borges-Araújo, Chris Brasnett, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 20
Paulo C. T. Souza, Luís Borges-Araújo, Chris Brasnett, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 20
Martini3-IDP: improved Martini 3 force field for disordered proteins
Liguo Wang, Christopher Brasnett, Luís Borges-Araújo, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
Liguo Wang, Christopher Brasnett, Luís Borges-Araújo, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
Martini 3 Coarse-Grained Force Field for Cholesterol
Luís Borges-Araújo, Ana C. Borges-Araújo, Tuğba N. Öztürk, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 20, pp. 7387-7404
Open Access | Times Cited: 39
Luís Borges-Araújo, Ana C. Borges-Araújo, Tuğba N. Öztürk, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 20, pp. 7387-7404
Open Access | Times Cited: 39
OLIVES: A Go̅-like Model for Stabilizing Protein Structure via Hydrogen Bonding Native Contacts in the Martini 3 Coarse-Grained Force Field
Kasper B. Pedersen, Luís Borges-Araújo, Amanda D. Stange, et al.
Journal of Chemical Theory and Computation (2024)
Open Access | Times Cited: 12
Kasper B. Pedersen, Luís Borges-Araújo, Amanda D. Stange, et al.
Journal of Chemical Theory and Computation (2024)
Open Access | Times Cited: 12
Assessing the Martini 3 protein model: A review of its path and potential
Luís Borges-Araújo, Gilberto P. Pereira, Mariana Valério, et al.
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (2024) Vol. 1872, Iss. 4, pp. 141014-141014
Closed Access | Times Cited: 11
Luís Borges-Araújo, Gilberto P. Pereira, Mariana Valério, et al.
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (2024) Vol. 1872, Iss. 4, pp. 141014-141014
Closed Access | Times Cited: 11
Martini on the Rocks: Can a Coarse-Grained Force Field Model Crystals?
A. Hosseini, David van der Spoel
The Journal of Physical Chemistry Letters (2024) Vol. 15, Iss. 4, pp. 1079-1088
Open Access | Times Cited: 5
A. Hosseini, David van der Spoel
The Journal of Physical Chemistry Letters (2024) Vol. 15, Iss. 4, pp. 1079-1088
Open Access | Times Cited: 5
Faster but Not Sweeter: A Model of Escherichia coli Re-level Lipopolysaccharide for Martini 3 and a Martini 2 Version with Accelerated Kinetics
Astrid F. Brandner, Dheeraj Prakaash, Alexandre Blanco-González, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 15, pp. 6890-6903
Open Access | Times Cited: 5
Astrid F. Brandner, Dheeraj Prakaash, Alexandre Blanco-González, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 15, pp. 6890-6903
Open Access | Times Cited: 5
Improved Protein Dynamics and Hydration in the Martini3 Coarse-Grain Model
Shalmali Kharche, Manjul Yadav, Vrushali R. Hande, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 3, pp. 837-850
Closed Access | Times Cited: 4
Shalmali Kharche, Manjul Yadav, Vrushali R. Hande, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 3, pp. 837-850
Closed Access | Times Cited: 4
Molecular-Scale Simulation of Wetting of Actin Filaments by Protein Droplets
James P. Andrews, Kimberly L. Weirich, Ulf Schiller
The Journal of Physical Chemistry B (2025)
Closed Access
James P. Andrews, Kimberly L. Weirich, Ulf Schiller
The Journal of Physical Chemistry B (2025)
Closed Access
Hexokinase-I directly binds to a charged membrane-buried glutamate of mitochondrial VDAC1 and VDAC2
Sebastian Bieker, Michael Timme, Nils Woge, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Sebastian Bieker, Michael Timme, Nils Woge, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Lipid Shape as a Membrane Activity Modulator of a Fusogenic Antimicrobial Peptide
Marcin Makowski, Octávio Luiz Franco, Nuno C. Santos, et al.
Journal of Chemical Information and Modeling (2025)
Closed Access
Marcin Makowski, Octávio Luiz Franco, Nuno C. Santos, et al.
Journal of Chemical Information and Modeling (2025)
Closed Access
GōMartini 3: From large conformational changes in proteins to environmental bias corrections
Paulo C. T. Souza, Luís Borges-Araújo, Christopher Brasnett, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Paulo C. T. Souza, Luís Borges-Araújo, Christopher Brasnett, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Building complex membranes with Martini 3
Tuğba N. Öztürk, Melanie König, Timothy S. Carpenter, et al.
Methods in enzymology on CD-ROM/Methods in enzymology (2024), pp. 237-285
Closed Access | Times Cited: 3
Tuğba N. Öztürk, Melanie König, Timothy S. Carpenter, et al.
Methods in enzymology on CD-ROM/Methods in enzymology (2024), pp. 237-285
Closed Access | Times Cited: 3
Recalibration of MARTINI-3 Parameters for Improved Interactions between Peripheral Proteins and Lipid Bilayers
J. Soni, Shivam Gupta, Taraknath Mandal
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 21, pp. 9673-9686
Closed Access | Times Cited: 3
J. Soni, Shivam Gupta, Taraknath Mandal
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 21, pp. 9673-9686
Closed Access | Times Cited: 3
Unraveling the Phase Behavior, Mechanical Stability, and Protein Reconstitution Properties of Polymer–Lipid Hybrid Vesicles
Wagner Augusto Müller, Paul A. Beales, André R. Muniz, et al.
Biomacromolecules (2023) Vol. 24, Iss. 9, pp. 4156-4169
Open Access | Times Cited: 7
Wagner Augusto Müller, Paul A. Beales, André R. Muniz, et al.
Biomacromolecules (2023) Vol. 24, Iss. 9, pp. 4156-4169
Open Access | Times Cited: 7
Coarse-Grained Model of Glycosaminoglycans for Biomolecular Simulations
Aishwary T. Shivgan, Jan K. Marzinek, Alexander Krah, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 8, pp. 3308-3321
Closed Access | Times Cited: 2
Aishwary T. Shivgan, Jan K. Marzinek, Alexander Krah, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 8, pp. 3308-3321
Closed Access | Times Cited: 2
Optimizing properties of translocation-enhancing transmembrane proteins
Ladislav Bartoš, Martina Drabinová, Robert Vácha
Biophysical Journal (2024) Vol. 123, Iss. 10, pp. 1240-1252
Open Access | Times Cited: 2
Ladislav Bartoš, Martina Drabinová, Robert Vácha
Biophysical Journal (2024) Vol. 123, Iss. 10, pp. 1240-1252
Open Access | Times Cited: 2
Mechanics of poly-arginine adsorption onto cell membrane by GM1 and their cluster forming: coarse-grained molecular dynamics study
Yongkang Lyu, Yonglin Cui, Xiaolin Chen, et al.
Journal of Molecular Structure (2024) Vol. 1322, pp. 140690-140690
Closed Access | Times Cited: 2
Yongkang Lyu, Yonglin Cui, Xiaolin Chen, et al.
Journal of Molecular Structure (2024) Vol. 1322, pp. 140690-140690
Closed Access | Times Cited: 2
Lys716 in the transmembrane domain of yeast mitofusin Fzo1 modulates anchoring and fusion
Raphaëlle Versini, Marc Baaden, Laetitia Cavellini, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Raphaëlle Versini, Marc Baaden, Laetitia Cavellini, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Faster but not sweeter: A model of E. coli Re-level lipopolysaccharide for Martini 3 and a Martini 2 version with accelerated kinetics
Astrid F. Brandner, Dheeraj Prakaash, Alexandre Blanco-González, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Astrid F. Brandner, Dheeraj Prakaash, Alexandre Blanco-González, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Insertion and Anchoring of HIV-1 Fusion Peptide into Complex Membrane Mimicking Human T-cell
Mingfei Zhao, L. Lopes, Harshita Sahni, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Mingfei Zhao, L. Lopes, Harshita Sahni, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Lys716 in the transmembrane domain of yeast mitofusin Fzo1 modulates anchoring and fusion
Raphaëlle Versini, Marc Baaden, Laetitia Cavellini, et al.
Structure (2024) Vol. 32, Iss. 11, pp. 1997-2012.e7
Open Access
Raphaëlle Versini, Marc Baaden, Laetitia Cavellini, et al.
Structure (2024) Vol. 32, Iss. 11, pp. 1997-2012.e7
Open Access
Coarse-Graining the Recognition of a Glycolipid by the C-Type Lectin Mincle Receptor
Maxime Noriega, Robin A. Corey, Evert Haanappel, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 41, pp. 9935-9946
Open Access
Maxime Noriega, Robin A. Corey, Evert Haanappel, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 41, pp. 9935-9946
Open Access
Insertion and Anchoring of the HIV-1 Fusion Peptide into a Complex Membrane Mimicking the Human T-Cell
Mingfei Zhao, Laura J. S. Lopes, Harshita Sahni, et al.
The Journal of Physical Chemistry B (2024)
Open Access
Mingfei Zhao, Laura J. S. Lopes, Harshita Sahni, et al.
The Journal of Physical Chemistry B (2024)
Open Access
Benchmarking a dual-scale hybrid simulation framework for small globular proteins combining the CHARMM36 and Martini2 models
Manjul Yadav, Shalmali Kharche, Shikha Prakash, et al.
Journal of Molecular Graphics and Modelling (2024) Vol. 135, pp. 108926-108926
Closed Access
Manjul Yadav, Shalmali Kharche, Shikha Prakash, et al.
Journal of Molecular Graphics and Modelling (2024) Vol. 135, pp. 108926-108926
Closed Access
