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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Automated methods for cell type annotation on scRNA-seq data
Giovanni Pasquini, Jesús Eduardo Rojo Arias, Patrick Schäfer, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 961-969
Open Access | Times Cited: 183

Showing 1-25 of 183 citing articles:

Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 513
scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data
Fan Yang, Wenchuan Wang, Fang Wang, et al.
Nature Machine Intelligence (2022) Vol. 4, Iss. 10, pp. 852-866
Open Access | Times Cited: 266
Advances in spatial transcriptomic data analysis
Ruben Dries, Jiaji Chen, Natalie Del Rossi, et al.
Genome Research (2021) Vol. 31, Iss. 10, pp. 1706-1718
Open Access | Times Cited: 172
scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network
Xin Shao, Haihong Yang, Xiang Zhuang, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 21, pp. e122-e122
Open Access | Times Cited: 112
Spatial omics: Navigating to the golden era of cancer research
Yingcheng Wu, Yifei Cheng, Xiangdong Wang, et al.
Clinical and Translational Medicine (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 92
Recent Advances of Deep Learning for Computational Histopathology: Principles and Applications
Yawen Wu, Michael Cheng, Shuo Huang, et al.
Cancers (2022) Vol. 14, Iss. 5, pp. 1199-1199
Open Access | Times Cited: 75
A reference cell tree will serve science better than a reference cell atlas
Silvia Domcke, Jay Shendure
Cell (2023) Vol. 186, Iss. 6, pp. 1103-1114
Closed Access | Times Cited: 67
Biologically informed deep learning to query gene programs in single-cell atlases
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, et al.
Nature Cell Biology (2023)
Open Access | Times Cited: 57
Single-cell transcriptomics for the assessment of cardiac disease
Antonio M. A. Miranda, Vaibhao Janbandhu, Henrike Maatz, et al.
Nature Reviews Cardiology (2022) Vol. 20, Iss. 5, pp. 289-308
Open Access | Times Cited: 67
scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets
Massimo Andreatta, Ariel Berenstein, Santiago J. Carmona
Bioinformatics (2022) Vol. 38, Iss. 9, pp. 2642-2644
Open Access | Times Cited: 63
Data analysis guidelines for single-cell RNA-seq in biomedical studies and clinical applications
Min‐Ying Su, Tao Pan, Qiu-Zhen Chen, et al.
Military Medical Research (2022) Vol. 9, Iss. 1
Open Access | Times Cited: 60
Deciphering endothelial heterogeneity in health and disease at single-cell resolution: progress and perspectives
Lisa M. Becker, Shiau-Haln Chen, Julie Rodor, et al.
Cardiovascular Research (2022) Vol. 119, Iss. 1, pp. 6-27
Open Access | Times Cited: 39
Single-cell RNA-seq methods to interrogate virus-host interactions
Kalani Ratnasiri, Aaron J. Wilk, Madeline Lee, et al.
Seminars in Immunopathology (2022) Vol. 45, Iss. 1, pp. 71-89
Open Access | Times Cited: 38
Recent Advances in Generative Adversarial Networks for Gene Expression Data: A Comprehensive Review
Minhyeok Lee
Mathematics (2023) Vol. 11, Iss. 14, pp. 3055-3055
Open Access | Times Cited: 28
Single-Cell RNA Sequencing of Coronary Perivascular Adipose Tissue From End-Stage Heart Failure Patients Identifies SPP1 + Macrophage Subpopulation as a Target for Alleviating Fibrosis
Mengxia Fu, Songren Shu, Zhiming Peng, et al.
Arteriosclerosis Thrombosis and Vascular Biology (2023) Vol. 43, Iss. 11, pp. 2143-2164
Open Access | Times Cited: 28
Cellcano: supervised cell type identification for single cell ATAC-seq data
Wenjing Ma, Jiaying Lu, Hao Wu
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 25
Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets
Sean K. Maden, Sang Ho Kwon, Louise A. Huuki-Myers, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 24
Complex Analysis of Single-Cell RNA Sequencing Data
Anna A. Khozyainova, Anna A. Valyaeva, Mikhail Arbatsky, et al.
Biochemistry (Moscow) (2023) Vol. 88, Iss. 2, pp. 231-252
Open Access | Times Cited: 23
Comparative Analysis of Single-Cell RNA Sequencing Methods with and without Sample Multiplexing
Yi Xie, Huimei Chen, Vasuki Ranjani Chellamuthu, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 7, pp. 3828-3828
Open Access | Times Cited: 10
Applications and emerging challenges of single-cell RNA sequencing technology in tumor drug discovery
Lu Zhang, Yueying Yang, Jianjun Tan
Drug Discovery Today (2025), pp. 104290-104290
Closed Access | Times Cited: 1
Single-cell and single-nuclei RNA sequencing as powerful tools to decipher cellular heterogeneity and dysregulation in neurodegenerative diseases
Raquel Cuevas‐Díaz Durán, Juan Carlos González-Orozco, Iván Velasco, et al.
Frontiers in Cell and Developmental Biology (2022) Vol. 10
Open Access | Times Cited: 38
Cell Taxonomy: a curated repository of cell types with multifaceted characterization
Shuai Jiang, Qiheng Qian, Tongtong Zhu, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D853-D860
Open Access | Times Cited: 32
Mapping and Validation of scRNA-Seq-Derived Cell-Cell Communication Networks in the Tumor Microenvironment
Kate Bridges, Kathryn Miller‐Jensen
Frontiers in Immunology (2022) Vol. 13
Open Access | Times Cited: 30
hECA: The cell-centric assembly of a cell atlas
Sijie Chen, Yanting Luo, Haoxiang Gao, et al.
iScience (2022) Vol. 25, Iss. 5, pp. 104318-104318
Open Access | Times Cited: 29
Single-Cell RNA Sequencing Technology Landscape in 2023
Hui‐Qi Qu, Charlly Kao, Hákon Hákonarson
Stem Cells (2023) Vol. 42, Iss. 1, pp. 1-12
Closed Access | Times Cited: 22
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