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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

MDM-TASK-web: MD-TASK and MODE-TASK web server for analyzing protein dynamics
Olivier Sheik Amamuddy, Michael Glenister, Thulani Tshabalala, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 5059-5071
Open Access | Times Cited: 37

Showing 1-25 of 37 citing articles:

RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles
Damiano Clementel, Alessio Del Conte, Alexander Miguel Monzón, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W651-W656
Open Access | Times Cited: 130
MDiGest: A Python package for describing allostery from molecular dynamics simulations
Federica Maschietto, Brandon Allen, Gregory W. Kyro, et al.
The Journal of Chemical Physics (2023) Vol. 158, Iss. 21
Open Access | Times Cited: 19
Harnessing Reversed Allosteric Communication: A Novel Strategy for Allosteric Drug Discovery
Jigang Fan, Yaqin Liu, Ren Kong, et al.
Journal of Medicinal Chemistry (2021) Vol. 64, Iss. 24, pp. 17728-17743
Closed Access | Times Cited: 36
Computational elucidation of allosteric communication in proteins for allosteric drug design
Duan Ni, Yaqin Liu, Ren Kong, et al.
Drug Discovery Today (2022) Vol. 27, Iss. 8, pp. 2226-2234
Closed Access | Times Cited: 28
Using residue interaction networks to understand protein function and evolution and to engineer new proteins
Dariia Yehorova, Bruno Di Geronimo, Michael Robinson, et al.
Current Opinion in Structural Biology (2024) Vol. 89, pp. 102922-102922
Open Access | Times Cited: 5
Novel dynamic residue network analysis approaches to study allosteric modulation: SARS-CoV-2 Mpro and its evolutionary mutations as a case study
Olivier Sheik Amamuddy, Rita Afriyie Boateng, Victor Barozi, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 6431-6455
Open Access | Times Cited: 24
Toll-like receptor 4 pathway evolutionary trajectory and functional emergence
Shailya Verma, Ramanathan Sowdhamini
Frontiers in Immunology (2025) Vol. 15
Open Access
Computational Development of Transmission-Blocking Vaccine Candidates Based on Fused Antigens of Pre- and Post-fertilization Gametocytes Against Plasmodium falciparum
Matthew A. Adeleke
Bioinformatics and Biology Insights (2025) Vol. 19
Open Access
Decoding Allosteric Effects of Missense Variations in Drug Metabolism: Afrocentric CYP3A4 Alleles Explored
Rehema Mukami Mwaniki, Wayde Veldman, Allan Sanyanga, et al.
Journal of Molecular Biology (2025), pp. 169160-169160
Open Access
Transfer Learning Towards Predicting Viral Missense Mutations: A Case Study on SARS-CoV-2
S. Govender, Emily L Morgan, Rabelani Ramahala, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 1686-1692
Open Access
Molecular Dynamics Investigation of Cysteine Mutations: Effects on Calcium Ion Affinity and Structural Stability in the RET Cysteine-Rich Domain
R. Bithia, C. George Priya Doss
Journal of Molecular Graphics and Modelling (2025), pp. 109072-109072
Closed Access
Allosteric modulation of Plasmodium falciparum Isoleucyl tRNA synthetase by South African natural compounds
Curtis Chepsiror, Wayde Veldman, Fisayo A. Olotu, et al.
PLoS ONE (2025) Vol. 20, Iss. 5, pp. e0321444-e0321444
Open Access
Deciphering Isoniazid Drug Resistance Mechanisms on Dimeric Mycobacterium tuberculosis KatG via Post-molecular Dynamics Analyses Including Combined Dynamic Residue Network Metrics
Victor Barozi, Thommas M. Musyoka, Olivier Sheik Amamuddy, et al.
ACS Omega (2022) Vol. 7, Iss. 15, pp. 13313-13332
Open Access | Times Cited: 15
Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0
James Krieger, Carlos Óscar S. Sorzano, J.M. Carazo, et al.
Acta Crystallographica Section D Structural Biology (2022) Vol. 78, Iss. 4, pp. 399-409
Open Access | Times Cited: 15
Revealing SARS-CoV-2 Mpro Mutation Cold and Hot Spots: Dynamic Residue Network Analysis Meets Machine Learning
Victor Barozi, Shrestha Chakraborty, S. Govender, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 3800-3816
Open Access | Times Cited: 3
Allosteric pockets and dynamic residue network hubs of falcipain 2 in mutations including those linked to artemisinin resistance
Chiamaka Jessica Okeke, Thommas M. Musyoka, Olivier Sheik Amamuddy, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 5647-5666
Open Access | Times Cited: 19
Investigation of Multi-Subunit Mycobacterium tuberculosis DNA-Directed RNA Polymerase and Its Rifampicin Resistant Mutants
Mokgerwa Zacharia Monama, Fisayo A. Olotu, Özlem Taştan Bishop
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 4, pp. 3313-3313
Open Access | Times Cited: 8
Structural insights into the role of deleterious mutations at the dimeric interface of Toll‐like receptor interferon‐β related adaptor protein
Shailya Verma, Revathy Menon, Ramanathan Sowdhamini
Proteins Structure Function and Bioinformatics (2024) Vol. 92, Iss. 10, pp. 1242-1258
Open Access | Times Cited: 2
Elucidating the conformational change of dengue envelope protein using the Markov state model
Dwaipayan Chaudhuri, Satyabrata Majumder, Joyeeta Datta, et al.
Molecular Simulation (2024) Vol. 50, Iss. 15, pp. 1153-1169
Closed Access | Times Cited: 2
Decoding the Molecular Effects of Atovaquone Linked Resistant Mutations on Plasmodium falciparum Cytb-ISP Complex in the Phospholipid Bilayer Membrane
Lorna J. Chebon, Taremekedzwa Allan Sanyanga, Colleen Varaidzo Manyumwa, et al.
International Journal of Molecular Sciences (2021) Vol. 22, Iss. 4, pp. 2138-2138
Open Access | Times Cited: 11
Evolutionary progression of collective mutations in Omicron sub-lineages towards efficient RBD-hACE2: Allosteric communications between and within viral and human proteins
Victor Barozi, Adrienne L. Edkins, Özlem Taştan Bishop
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 4562-4578
Open Access | Times Cited: 7
Repurposing DrugBank compounds as potential Plasmodium falciparum class 1a aminoacyl tRNA synthetase multi-stage pan-inhibitors with a specific focus on mitomycin
Fisayo A. Olotu, Mariscal Brice Tchatat Tali, Curtis Chepsiror, et al.
International Journal for Parasitology Drugs and Drug Resistance (2024) Vol. 25, pp. 100548-100548
Open Access | Times Cited: 1
Functional insight into Cordyceps militaris sugar transporters by structure modeling, network analysis and allosteric regulation
Xin Liu, Hanyang Zhang, Ziyun Zhou, et al.
Physical Chemistry Chemical Physics (2023) Vol. 25, Iss. 20, pp. 14311-14323
Closed Access | Times Cited: 3
The Power of Molecular Dynamics Simulations and Their Applications to Discover Cysteine Protease Inhibitors
Igor José dos Santos Nascimento, Joilly Nilce Santana Gomes, Jéssika de Oliveira Viana, et al.
Mini-Reviews in Medicinal Chemistry (2023) Vol. 24, Iss. 11, pp. 1125-1146
Open Access | Times Cited: 3
Connecting the dots: A practical evaluation of web-tools for describing protein dynamics as networks
Francesco Petrizzelli, Tommaso Biagini, Salvatore Daniele Bianco, et al.
Frontiers in Bioinformatics (2022) Vol. 2
Open Access | Times Cited: 5
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