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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Deconvolution algorithms for inference of the cell-type composition of the spatial transcriptome
Yingkun Zhang, Xinrui Lin, Zhixian Yao, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 21, pp. 176-184
Open Access | Times Cited: 24

Showing 24 citing articles:

Spatial landscapes of cancers: insights and opportunities
Julia Chen, Ludvig Larsson, Alexander Swarbrick, et al.
Nature Reviews Clinical Oncology (2024) Vol. 21, Iss. 9, pp. 660-674
Closed Access | Times Cited: 18
Understanding testicular single cell transcriptional atlas: from developmental complications to male infertility
Munichandra Babu Tirumalasetty, Indrashis Bhattacharya, Mohammad Sarif Mohiuddin, et al.
Frontiers in Endocrinology (2024) Vol. 15
Open Access | Times Cited: 8
Measuring the composition of the tumor microenvironment with transcriptome analysis: past, present and future
Han Zhang, Xinghua Lu, Binfeng Lu, et al.
Future Oncology (2024) Vol. 20, Iss. 17, pp. 1207-1220
Open Access | Times Cited: 7
Community assessment of methods to deconvolve cellular composition from bulk gene expression
Brian S. White, Aurélien de Reyniès, Aaron M. Newman, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
A practical guide to spatial transcriptomics
Lukás Valihrach, Daniel Žucha, Pavel Abaffy, et al.
Molecular Aspects of Medicine (2024) Vol. 97, pp. 101276-101276
Closed Access | Times Cited: 4
Rediscovering the human thymus through cutting-edge technologies
Francesca Pala, Luigi D. Notarangelo, Marita Bosticardo
The Journal of Experimental Medicine (2024) Vol. 221, Iss. 10
Open Access | Times Cited: 4
Spatial Transcriptomics Unravel the Tissue Complexity of Oral Pathogenesis
Jack O. Haller, N. Abedi, A. Hafedi, et al.
Journal of Dental Research (2024) Vol. 103, Iss. 13, pp. 1331-1339
Closed Access | Times Cited: 4
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 4
A practical guide for choosing an optimal spatial transcriptomics technology from seven major commercially available options
H. Lim, Ye Wang, Anton Buzdin, et al.
BMC Genomics (2025) Vol. 26, Iss. 1
Open Access
Mapping molecular landscapes in triple-negative breast cancer: insights from spatial transcriptomics
Fares Saeed H. Al-Mansour, Hassan H. Almasoudi, Ali Albarrati
Naunyn-Schmiedeberg s Archives of Pharmacology (2025)
Closed Access
Single Cell and Spatial Omics and Applications in Toxicology
David A. Gallegos, Dakota R. Robarts, David S. Umbaugh
Elsevier eBooks (2025)
Closed Access
SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data
Yunqing Liu, Ningshan Li, Ji Qi, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
scDOT: optimal transport for mapping senescent cells in spatial transcriptomics
Nam D. Nguyen, Lorena Rosas, Timur O. Khaliullin, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
SMART: spatial transcriptomics deconvolution using marker-gene-assisted topic model
Chen Xi Yang, Don D. Sin, Raymond T. Ng
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Spatial transcriptomics in human biomedical research and clinical application
Weining Hu, Yin Zhang, Junpu Mei, et al.
Current Medicine (2023) Vol. 2, Iss. 1
Open Access | Times Cited: 5
SMART: reference-free deconvolution for spatial transcriptomics using marker-gene-assisted topic models
Chen Xi Yang, DD Sin, RT Ng
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Adjustment of scRNA-seq data to improve cell-type decomposition of spatial transcriptomics
Lanying Wang, Yuxuan Hu, Lin Gao
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 1
MIF as a potential diagnostic and prognostic biomarker for triple‐negative breast cancer that correlates with the polarization of M2 macrophages
Mengting Chen, Hongsen Liu, Bo Hong, et al.
The FASEB Journal (2024) Vol. 38, Iss. 10
Open Access | Times Cited: 1
Community assessment of methods to deconvolve cellular composition from bulk gene expression
Brian S. White, Aurélien de Reyniès, Aaron M. Newman, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 7
Optimal transport for mapping senescent cells in spatial transcriptomics
Nam D. Nguyen, Lorena Rosas, Timur O. Khaliullin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
A hybrid machine learning and regression method for cell type deconvolution of spatial barcoding-based transcriptomic data
Yunqing Liu, Ningshan Li, Ji Qi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
siqRNA-seq is a spike-in-independent technique for quantitative mapping of mRNA landscape
Zhenzhen Wang, Kehan Tao, Jiaojiao Ji, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access
STGAT: Graph attention networks for deconvolving spatial transcriptomics data
Wei Li, Huixia Zhang, Linjie Wang, et al.
Computer Methods and Programs in Biomedicine (2024) Vol. 257, pp. 108431-108431
Closed Access
Multi-omic single cell sequencing: Overview and opportunities for kidney disease therapeutic development
Steven Pregizer, Thom Vreven, Mohit Mathur, et al.
Frontiers in Molecular Biosciences (2023) Vol. 10
Open Access | Times Cited: 1
RETROFIT: REFERENCE-FREE DECONVOLUTION OF CELL-TYPE MIXTURES IN SPATIAL TRANSCRIPTOMICS
Roopali Singh, Xi He, A Park, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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