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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

More than a look into a crystal ball: protein structure elucidation guided by molecular dynamics simulations
Marcel Bermúdez, Jérémie Mortier, Christin Rakers, et al.
Drug Discovery Today (2016) Vol. 21, Iss. 11, pp. 1799-1805
Closed Access | Times Cited: 46

Showing 1-25 of 46 citing articles:

Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development
Outi M. H. Salo‐Ahen, Ida Alanko, Rajendra Bhadane, et al.
Processes (2020) Vol. 9, Iss. 1, pp. 71-71
Open Access | Times Cited: 373
The current understanding of KRAS protein structure and dynamics
Tatu Pantsar
Computational and Structural Biotechnology Journal (2019) Vol. 18, pp. 189-198
Open Access | Times Cited: 216
Molecular Dynamics Simulation for Mechanism Elucidation of Food Processing and Safety: State of the Art
Gang Chen, Kai Huang, Ming Miao, et al.
Comprehensive Reviews in Food Science and Food Safety (2018) Vol. 18, Iss. 1, pp. 243-263
Open Access | Times Cited: 76
Fentanyl Family at the Mu-Opioid Receptor: Uniform Assessment of Binding and Computational Analysis
Piotr F. J. Lipiński, Piotr Kossoń, Joanna Matalińska, et al.
Molecules (2019) Vol. 24, Iss. 4, pp. 740-740
Open Access | Times Cited: 51
Strategies for the discovery of biased GPCR ligands
Marcel Bermúdez, Trung Ngoc Nguyen, Christian Omieczynski, et al.
Drug Discovery Today (2019) Vol. 24, Iss. 4, pp. 1031-1037
Closed Access | Times Cited: 47
Statistical Measures to Quantify Similarity between Molecular Dynamics Simulation Trajectories
Jenny Farmer, Fareeha Kanwal, N. Nikulsin, et al.
Entropy (2017) Vol. 19, Iss. 12, pp. 646-646
Open Access | Times Cited: 44
GPCRM: a homology modeling web service with triple membrane-fitted quality assessment of GPCR models
Przemysław Miszta, Paweł Pasznik, Jakub Jakowiecki, et al.
Nucleic Acids Research (2018) Vol. 46, Iss. W1, pp. W387-W395
Open Access | Times Cited: 43
Computational Studies of Snake Venom Toxins
Paola Ojeda, David Ramírez, Jans Alzate‐Morales, et al.
Toxins (2017) Vol. 10, Iss. 1, pp. 8-8
Open Access | Times Cited: 41
Arginase Structure and Inhibition: Catalytic Site Plasticity Reveals New Modulation Possibilities
Jérémie Mortier, Julien R. C. Prévost, Dominique Sydow, et al.
Scientific Reports (2017) Vol. 7, Iss. 1
Open Access | Times Cited: 40
A Molecular Modeling Approach to Identify Novel Inhibitors of the Major Facilitator Superfamily of Efflux Pump Transporters
Sandra G. Zárate, Paula Morales, Katarzyna Świderek, et al.
Antibiotics (2019) Vol. 8, Iss. 1, pp. 25-25
Open Access | Times Cited: 40
Structural insights into understudied human cytochrome P450 enzymes
David Machalz, Szymon Pach, Marcel Bermúdez, et al.
Drug Discovery Today (2021) Vol. 26, Iss. 10, pp. 2456-2464
Closed Access | Times Cited: 31
Molecular dynamics simulations: Principles, methods, and applications in protein conformational dynamics
Aditya K. Padhi, Matej Janežič, Kam Y. J. Zhang
Elsevier eBooks (2022), pp. 439-454
Closed Access | Times Cited: 19
Fe(ii) and 2-oxoglutarate-dependent dioxygenases for natural product synthesis: molecular insights into reaction diversity
Songyin Zhao, Lunjie Wu, Yan Xu, et al.
Natural Product Reports (2024)
Closed Access | Times Cited: 4
OpenMMDL - Simplifying the Complex: Building, Simulating, and Analyzing Protein–Ligand Systems in OpenMM
Valerij Talagayev, Yu Chen, Niklas Piet Doering, et al.
Journal of Chemical Information and Modeling (2025)
Closed Access
Evaluation of antiviral potential of Cinchona officinalis derived compounds against COVID-19 and Human hepatitis B: An in silico Molecular Docking and Molecular Dynamics Simulation study
Emmanuel Kitete Mulongo, Aristote Matondo, Koto-te-Nyiwa Ngbolua, et al.
Pharmacological Research - Natural Products (2025), pp. 100229-100229
Closed Access
Molecular dynamics simulations elucidate conformational selection and induced fit mechanisms in the binding of PD-1 and PD-L1
Wenping Liu, Bing Huang, Yashu Kuang, et al.
Molecular BioSystems (2017) Vol. 13, Iss. 5, pp. 892-900
Closed Access | Times Cited: 37
Truly Target-Focused Pharmacophore Modeling: A Novel Tool for Mapping Intermolecular Surfaces
Jérémie Mortier, Pratik Dhakal, Andrea Volkamer
Molecules (2018) Vol. 23, Iss. 8, pp. 1959-1959
Open Access | Times Cited: 36
Molecular Dynamics Simulations and Dynamic Network Analysis Reveal the Allosteric Unbinding of Monobody to H-Ras Triggered by R135K Mutation
Duan Ni, Kun Song, Jian Zhang, et al.
International Journal of Molecular Sciences (2017) Vol. 18, Iss. 11, pp. 2249-2249
Open Access | Times Cited: 27
Ligand-Specific Restriction of Extracellular Conformational Dynamics Constrains Signaling of the M2 Muscarinic Receptor
Marcel Bermúdez, Andreas Böck, Fabian Krebs, et al.
ACS Chemical Biology (2017) Vol. 12, Iss. 7, pp. 1743-1748
Closed Access | Times Cited: 26
In Silico and Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility
Christopher Holland, Bruce J. MacLachlan, Valentina Bianchi, et al.
Frontiers in Immunology (2018) Vol. 9
Open Access | Times Cited: 25
Importance of asparagine-381 and arginine-487 for substrate recognition in CYP4Z1
Wei Du, David Machalz, Yan Qi, et al.
Biochemical Pharmacology (2020) Vol. 174, pp. 113850-113850
Closed Access | Times Cited: 19
The Effect of β-Sheet Secondary Structure on All-β Proteins by Molecular Dynamics Simulations
Zhou Feng, Fang Xia, Zhouting Jiang
Molecules (2024) Vol. 29, Iss. 13, pp. 2967-2967
Open Access | Times Cited: 2
Microsecond MD simulations of human CYP2D6 wild-type and five allelic variants reveal mechanistic insights on the function
Charleen G. Don, Martin Smieško
PLoS ONE (2018) Vol. 13, Iss. 8, pp. e0202534-e0202534
Open Access | Times Cited: 17
Thermodynamic and first-principles biomolecular simulations applied to synthetic biology: promoter and aptamer designs
Kristin V. Presnell, Hal S. Alper
Molecular Systems Design & Engineering (2017) Vol. 3, Iss. 1, pp. 19-37
Closed Access | Times Cited: 12
Influence of Secondary-Structure Folding on the Mutually Exclusive Folding Process of GL5/I27 Protein: Evidence from Molecular Dynamics Simulations
Qing Wang, Yan Wang, Guangju Chen
International Journal of Molecular Sciences (2016) Vol. 17, Iss. 11, pp. 1962-1962
Open Access | Times Cited: 10
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