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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Emerging Methods and Applications to Decrypt Allostery in Proteins and Nucleic Acids
Pablo R. Arantes, Amun C. Patel, Giulia Palermo
Journal of Molecular Biology (2022) Vol. 434, Iss. 17, pp. 167518-167518
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

High-fidelity, hyper-accurate, and evolved mutants rewire atomic-level communication in CRISPR-Cas9
Erin Skeens, Souvik Sinha, Mohd Ahsan, et al.
Science Advances (2024) Vol. 10, Iss. 10
Open Access | Times Cited: 20
Machine learning approaches in predicting allosteric sites
Francho Nerín-Fonz, Zoe Cournia
Current Opinion in Structural Biology (2024) Vol. 85, pp. 102774-102774
Open Access | Times Cited: 19
Allosteric drugs: New principles and design approaches
Wei-Ven Tee, Igor N. Berezovsky
Current Opinion in Structural Biology (2024) Vol. 84, pp. 102758-102758
Closed Access | Times Cited: 16
New design strategies for ultra-specific CRISPR-Cas13a-based RNA detection with single-nucleotide mismatch sensitivity
Adrian M. Molina Vargas, Souvik Sinha, Raven M. Osborn, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. 2, pp. 921-939
Open Access | Times Cited: 25
The role of ribosomal protein networks in ribosome dynamics
Youri Timsit, Grégoire Sergeant-Perthuis, Daniel Bennequin
Nucleic Acids Research (2025) Vol. 53, Iss. 1
Open Access | Times Cited: 1
Unveiling the RNA-mediated allosteric activation discloses functional hotspots in CRISPR-Cas13a
Souvik Sinha, Adrian M. Molina Vargas, Pablo Arantes, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. 2, pp. 906-920
Open Access | Times Cited: 17
Dynamics and mechanisms of CRISPR-Cas9 through the lens of computational methods
Aakash Saha, Pablo R. Arantes, Giulia Palermo
Current Opinion in Structural Biology (2022) Vol. 75, pp. 102400-102400
Open Access | Times Cited: 25
Machine learning and protein allostery
Sian Xiao, Gennady M. Verkhivker, Peng Tao
Trends in Biochemical Sciences (2022) Vol. 48, Iss. 4, pp. 375-390
Open Access | Times Cited: 20
NRIMD, a Web Server for Analyzing Protein Allosteric Interactions Based on Molecular Dynamics Simulation
Yi He, Shuang Wang, Shuai Zeng, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 19, pp. 7176-7183
Closed Access | Times Cited: 4
Evolutionary rewiring of the dynamic network underpinning allosteric epistasis in NS1 of the influenza A virus
James E. Gonzales, Iktae Kim, Abhishek Bastiray, et al.
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 8
Open Access
Multiscale Allostery: Basic Mechanisms and Versatility in Diagnostics and Drug Design
Igor N. Berezovsky, Ruth Nussinov
Journal of Molecular Biology (2022) Vol. 434, Iss. 17, pp. 167751-167751
Closed Access | Times Cited: 18
Structural Basis for Reduced Dynamics of Three Engineered HNH Endonuclease Lys-to-Ala Mutants for the Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-Associated 9 (CRISPR/Cas9) Enzyme
Jimin Wang, Erin Skeens, Pablo R. Arantes, et al.
Biochemistry (2022) Vol. 61, Iss. 9, pp. 785-794
Open Access | Times Cited: 17
Allostery
Mateu Montserrat‐Canals, Gabriele Cordara, Ute Krengel
Quarterly Reviews of Biophysics (2025) Vol. 58
Closed Access
The Evolving Landscape of Protein Allostery: From Computational and Experimental Perspectives
E. Srinivasan, Grigor Arakelov, Nikolay V. Dokholyan
Journal of Molecular Biology (2025), pp. 169060-169060
Closed Access
Structural Analysis and Mutability Landscape-Guided Engineering of ω-Transaminase for Improved Catalytic Performance
Puhong Yi, Yue Xu, Yuhua Hao, et al.
Journal of Agricultural and Food Chemistry (2025)
Closed Access
Twisting and swiveling domain motions in Cas9 to recognize target DNA duplexes, make double-strand breaks, and release cleaved duplexes
Jimin Wang, Pablo R. Arantes, Mohd Ahsan, et al.
Frontiers in Molecular Biosciences (2023) Vol. 9
Open Access | Times Cited: 8
New design strategies for ultra-specific CRISPR-Cas13a-based RNA-diagnostic tools with single-nucleotide mismatch sensitivity
Adrian M. Molina Vargas, Raven M. Osborn, Souvik Sinha, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
Graph theory approaches for molecular dynamics simulations
Amun C. Patel, Souvik Sinha, Giulia Palermo
Quarterly Reviews of Biophysics (2024) Vol. 57
Closed Access | Times Cited: 3
Machine learning approaches in predicting allosteric sites
Francho Nerín-Fonz, Zoe Cournia
(2024)
Open Access | Times Cited: 2
Sequence-dependent model of allosteric communication
Enrico Guarnera, Igor N. Berezovsky
The Journal of Chemical Physics (2023) Vol. 158, Iss. 13
Closed Access | Times Cited: 6
On the allosteric puzzle and pocket crosstalk through computational means
Riccardo Aguti, Mattia Bernetti, Stefano Bosio, et al.
The Journal of Chemical Physics (2023) Vol. 158, Iss. 16
Closed Access | Times Cited: 6
Cancer-Related Mutations Alter RNA-Driven Functional Cross-Talk Underlying Premature-Messenger RNA Recognition by Splicing Factor SF3b
Angelo Spinello, Pavel Janoš, Riccardo Rozza, et al.
The Journal of Physical Chemistry Letters (2023) Vol. 14, Iss. 27, pp. 6263-6269
Open Access | Times Cited: 6
RNA’s Dynamic Conformational Selection and Entropic Allosteric Mechanism in Controlling Cascade Protein Binding Events
Amrita Chakraborty, D. M. Samant, Raju Sarkar, et al.
The Journal of Physical Chemistry Letters (2024) Vol. 15, Iss. 23, pp. 6115-6125
Closed Access | Times Cited: 1
ATOMDANCE: Kernel-based denoising and choreographic analysis for protein dynamic comparison
Gregory A. Babbitt, Madhusudan Rajendran, Miranda L. Lynch, et al.
Biophysical Journal (2024) Vol. 123, Iss. 17, pp. 2705-2715
Open Access | Times Cited: 1
Deciphering Internal Regulatory Patterns within the p53 Core Tetramer: Insights from Community Network Analysis
Han Zhou, Shiwei Yan
The Journal of Physical Chemistry Letters (2024) Vol. 15, Iss. 38, pp. 9652-9658
Closed Access | Times Cited: 1
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