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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

CHARMM-GUI PDB Manipulator: Various PDB Structural Modifications for Biomolecular Modeling and Simulation
Sang‐Jun Park, Nathan R. Kern, Turner Brown, et al.
Journal of Molecular Biology (2023) Vol. 435, Iss. 14, pp. 167995-167995
Open Access | Times Cited: 80

Showing 1-25 of 80 citing articles:

CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed
Wonmuk Hwang, Steven L. Austin, Arnaud Blondel, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 41, pp. 9976-10042
Open Access | Times Cited: 22
Unprecedented carbonic anhydrase inhibition mechanism: Targeting histidine 64 side chain through a halogen bond
Roberto Paciotti, Simone Carradori, Andrea Angeli, et al.
Archiv der Pharmazie (2025) Vol. 358, Iss. 1
Open Access | Times Cited: 2
Enzyme Immobilization with Plant-based Polysaccharides through Complex Coacervation
Waritsara Khongkomolsakul, Eunhye Yang, Younas Dadmohammadi, et al.
LWT (2025) Vol. 219, pp. 117537-117537
Open Access | Times Cited: 2
CHARMM-GUI Membrane Builder: Past, Current, and Future Developments and Applications
Shasha Feng, Soohyung Park, Yeol Kyo Choi, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 8, pp. 2161-2185
Open Access | Times Cited: 41
Molecular dynamics simulation techniques and their application to aroma compounds/cyclodextrin inclusion complexes: A review
Xingran Kou, Dongdong Su, Fei Pan, et al.
Carbohydrate Polymers (2023) Vol. 324, pp. 121524-121524
Closed Access | Times Cited: 28
CHARMM-GUI Multicomponent Assembler for modeling and simulation of complex multicomponent systems
Nathan R. Kern, Jumin Lee, Yeol Kyo Choi, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
CHARMM-GUI EnzyDocker for Protein–Ligand Docking of Multiple Reactive States along a Reaction Coordinate in Enzymes
Donghyuk Suh, Renana Schwartz, Prashant Kumar Gupta, et al.
Journal of Chemical Theory and Computation (2025)
Open Access | Times Cited: 1
Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family
Chulwon Choi, Jungnam Bae, Seonghan Kim, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 21
Why Does the E1219V Mutation Expand T-Rich PAM Recognition in Cas9 from Streptococcus pyogenes?
Shreya Bhattacharya, Priyadarshi Satpati
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 8, pp. 3237-3247
Closed Access | Times Cited: 7
Decoding the dynamics of BCL9 triazole stapled peptide
Vikram Gaikwad, Asha Rani Choudhury, Rajarshi Chakrabarti
Biophysical Chemistry (2024) Vol. 307, pp. 107197-107197
Closed Access | Times Cited: 5
CHARMM-GUI QM/MM Interfacer for a Quantum Mechanical and Molecular Mechanical (QM/MM) Simulation Setup: 1. Semiempirical Methods
Donghyuk Suh, Abdul Raafik Arattu Thodika, Seonghoon Kim, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 12, pp. 5337-5351
Open Access | Times Cited: 5
J-domain Proteins form Binary Complexes with Hsp90 and Ternary Complexes with Hsp90 and Hsp70
Anushka Wickramaratne, Jui‐Yun Rei Liao, Shannon M. Doyle, et al.
Journal of Molecular Biology (2023) Vol. 435, Iss. 17, pp. 168184-168184
Open Access | Times Cited: 12
Molecular dynamics simulations of nucleosomes are coming of age
Anastasiia S. Fedulova, Grigoriy A. Armeev, Tatiana A. Romanova, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2024) Vol. 14, Iss. 4
Closed Access | Times Cited: 4
Binding ability of Delta and Omicron towards the angiotensin-converting enzyme 2 receptor and antibodies: a computational study
Quoc‐Thai Nguyen, Tan Thanh, Lam-Truong Tuong, et al.
Journal of Biomolecular Structure and Dynamics (2025), pp. 1-13
Closed Access
Prognostic, biological, and structural implications of FLT3-JMD point mutations in acute myeloid leukemia: an analysis of Alliance studies
Nadeen Anabtawi, Deedra Nicolet, Najla Alotaibi, et al.
Leukemia (2025)
Open Access
OPRLM: a web tool and a database for positioning and simulations of proteins in realistic lipid membranes
Sang‐Jun Park, Kyle A Schnitzer, Alexander Kovalenko, et al.
Journal of Molecular Biology (2025), pp. 168966-168966
Closed Access
Syntaxin 1A Transmembrane Domain Palmitoylation 1 Induces a Fusogenic Conformation
Dong An, Satyan Sharma, Manfred Lindau
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Satellite Tobacco Mosaic Virus: Revealing Environmental Drivers of Capsid and Nucleocapsid Stability using High-Resolution Simulations
Marharyta Blazhynska, Olivier Adjoua, Zoe Vetter, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Molecular Dynamics Simulation of the Thermal Treatment of the Ara h 6 Peanut Protein
Andrea Smith, G.S.V. Raghavan
Processes (2025) Vol. 13, Iss. 2, pp. 434-434
Open Access
Binding Energy Calculations of Anthracene and Rhodamine 6G H-Type Dimers: A Comparative Study of DFT and SMD Methods
Daniel Doveiko, Karina Kubiak-Ossowska, Yu Chen
The Journal of Physical Chemistry A (2025)
Open Access
Statistical Analysis of the Effect of Simulation Time on the Results of Molecular Dynamics Studies of Food Proteins: A Study of the Ara h 6 Peanut Protein
Andrea Smith, G.S.V. Raghavan
Processes (2025) Vol. 13, Iss. 2, pp. 581-581
Open Access
Exploring the modulation of phosphorylation and SUMOylation-dependent NPR1 conformational switching on immune regulators TGA3 and WRKY70 through molecular simulation
P. Raghuraman, SeonJoo Park
Plant Physiology and Biochemistry (2025) Vol. 222, pp. 109711-109711
Closed Access
Lymph-Node Inspired Hydrogels Enhance CAR Expression and Proliferation of CAR T Cells
Miquel Castellote‐Borrell, Marc Domingo, Francesca Merlina, et al.
ACS Applied Materials & Interfaces (2025)
Open Access
Discovery of mammalian collagens I and III within ancient poriferan biopolymer spongin
Hermann Ehrlich, Ivan Mikšı́k, Mikhail V. Tsurkan, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Multiple Pendants-Bearing Triglucosides for Membrane Protein Studies: Effects of Pendant Length and Number on Micelle Interior Hydration and Protein Stability
Aiman Sadaf, Hong Sik Yun, Hajin Lee, et al.
Biomacromolecules (2025)
Closed Access
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