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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

EmbedSeg: Embedding-based Instance Segmentation for Biomedical Microscopy Data
Manan Lalit, Pavel Tomančák, Florian Jug
Medical Image Analysis (2022) Vol. 81, pp. 102523-102523
Closed Access | Times Cited: 36

Showing 1-25 of 36 citing articles:

Segmentation metric misinterpretations in bioimage analysis
Dominik Hirling, Ervin Tasnádi, Juan C. Caicedo, et al.
Nature Methods (2023) Vol. 21, Iss. 2, pp. 213-216
Open Access | Times Cited: 35
Detection and Counting of Maize Leaves Based on Two-Stage Deep Learning with UAV-Based RGB Image
Xingmei Xu, Lu Wang, Meiyan Shu, et al.
Remote Sensing (2022) Vol. 14, Iss. 21, pp. 5388-5388
Open Access | Times Cited: 30
Opportunities and challenges for deep learning in cell dynamics research
Binghao Chai, Christoforos Efstathiou, Haoran Yue, et al.
Trends in Cell Biology (2023)
Open Access | Times Cited: 20
AnyStar: Domain randomized universal star-convex 3D instance segmentation
Neel Dey, S. Mazdak Abulnaga, Benjamin Billot, et al.
2022 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) (2024), pp. 7578-7588
Open Access | Times Cited: 8
MMV_Im2Im: an open-source microscopy machine vision toolbox for image-to-image transformation
Justin Sonneck, Yu Zhou, Jianxu Chen
GigaScience (2024) Vol. 13
Open Access | Times Cited: 7
Morphodynamics of human early brain organoid development
Akanksha Jain, Gilles Gut, Fátima Sanchís-Calleja, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 15
Depth-enhanced high-throughput microscopy by compact PSF engineering
Nadav Opatovski, Elias Nehme, Noam Zoref, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Nuclear instance segmentation and tracking for preimplantation mouse embryos
Hayden Nunley, Binglun Shao, David Denberg, et al.
Development (2024) Vol. 151, Iss. 21
Open Access | Times Cited: 5
SegElegans: Instance segmentation using dual convolutional recurrent neural network decoder in Caenorhabditis elegans microscopic images
Pablo E. Layana Castro, Konstantinos Kounakis, Antonio García Garví, et al.
Computers in Biology and Medicine (2025) Vol. 190, pp. 110012-110012
Open Access
Advanced optical imaging for the rational design of nanomedicines
Ana Ortiz‐Perez, Miao Zhang, Laurence W. Fitzpatrick, et al.
Advanced Drug Delivery Reviews (2023) Vol. 204, pp. 115138-115138
Open Access | Times Cited: 10
Supra-second tracking and live-cell karyotyping reveal principles of mitotic chromosome dynamics
Rumen Stamatov, Sonya Uzunova, Yoana Kicheva, et al.
Nature Cell Biology (2025)
Open Access
Digitalized organoids: integrated pipeline for high-speed 3D analysis of organoid structures using multilevel segmentation and cellular topology
Hui Ting Ong, Esra Karatas, Titouan Poquillon, et al.
Nature Methods (2025)
Open Access
A general algorithm for consensus 3D cell segmentation from 2D segmented stacks
Felix Zhou, Clarence Yapp, Zhiguo Shang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
An end-to-end pipeline based on open source deep learning tools for reliable analysis of complex 3D images of ovaries
Manon Lesage, Manon Thomas, Thierry Pécot, et al.
Development (2023) Vol. 150, Iss. 7
Open Access | Times Cited: 5
Active mesh and neural network pipeline for cell aggregate segmentation
Matthew B. Smith, Hugh Sparks, Jorge Almagro, et al.
Biophysical Journal (2023) Vol. 122, Iss. 9, pp. 1586-1599
Open Access | Times Cited: 5
ACTIS: Improving data efficiency by leveraging semi-supervised Augmentation Consistency Training for Instance Segmentation
Josef Lorenz Rumberger, Jannik Franzen, P. B. Hirsch, et al.
(2023), pp. 3792-3801
Closed Access | Times Cited: 4
OrganoLabeling: Quick and accurate annotation tool for organoid images
Burak Kahveci, Elifsu Polatlı, Yalın Baştanlar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
CellSeg3D: self-supervised 3D cell segmentation for microscopy
Cyril Achard, Timokleia Kousi, M. M. Frey, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Computer-assisted image analysis of preexisting histological patterns of the cephalic vein to predict wrist arteriovenous fistula non-maturation
Jeng‐Wei Chen, Mao Ting, Po-Ya Chang, et al.
Journal of the Formosan Medical Association (2024)
Open Access | Times Cited: 1
Registration of multimodal bone images based on edge similarity metaheuristic
Dibin Zhou, Yu Chen, Wenhao Liu, et al.
Computers in Biology and Medicine (2024) Vol. 174, pp. 108379-108379
Open Access | Times Cited: 1
Augmented contour scoring snake for instance segmentation of placental separable villi
Yiming Liu, Tao Xiang, Yan Wang, et al.
Biomedical Signal Processing and Control (2024) Vol. 97, pp. 106713-106713
Closed Access | Times Cited: 1
A novel ground truth dataset enables robust 3D nuclear instance segmentation in early mouse embryos
Hayden Nunley, Binglun Shao, Prateek Grover, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Visualizing and quantifying molecular and cellular processes in Caenorhabditis elegans using light microscopy
Pavak K. Shah, Zhirong Bao, Ronen Zaidel‐Bar
Genetics (2022) Vol. 221, Iss. 4
Open Access | Times Cited: 4
Active mesh and neural network pipeline for cell aggregate segmentation
Matthew B. Smith, Hugh Sparks, Jorge Almagro, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Digitalized organoids: integrated pipeline for 3D high-speed analysis of organoid structures using multilevel segmentation and cellular topology
Hui Ting Ong, Esra Karatas, Gianluca Grenci, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
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