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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus
Ran Brosh, Camila Coelho, André M. Ribeiro-dos-Santos, et al.
Molecular Cell (2023) Vol. 83, Iss. 7, pp. 1140-1152.e7
Open Access | Times Cited: 37

Showing 1-25 of 37 citing articles:

Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness
Shreeta Chakraborty, Nina Kopitchinski, Zhenyu Zuo, et al.
Nature Genetics (2023) Vol. 55, Iss. 2, pp. 280-290
Open Access | Times Cited: 76
Direct observation of a condensate effect on super-enhancer controlled gene bursting
Manyu Du, Simon Hendrik Stitzinger, Jan-Hendrik Spille, et al.
Cell (2024) Vol. 187, Iss. 2, pp. 331-344.e17
Open Access | Times Cited: 69
An encyclopedia of enhancer-gene regulatory interactions in the human genome
Andreas R. Gschwind, Kristy S. Mualim, Alireza Karbalayghareh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 46
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Jean‐Benoît Lalanne, Samuel G. Regalado, Silvia Domcke, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 983-993
Open Access | Times Cited: 20
Exploring the interplay between enhancer–promoter interactions and transcription
Ryan Kittle, Michal Levo
Current Opinion in Genetics & Development (2025) Vol. 90, pp. 102303-102303
Open Access | Times Cited: 2
Conserved Cis-Acting Range Extender Element Mediates Extreme Long-Range Enhancer Activity in Mammals
Grace Bower, Ethan W. Hollingsworth, Sandra Jacinto, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 14
Synthetic reversed sequences reveal default genomic states
Brendan Camellato, Ran Brosh, Hannah J. Ashe, et al.
Nature (2024) Vol. 628, Iss. 8007, pp. 373-380
Open Access | Times Cited: 12
Bidirectional epigenetic editing reveals hierarchies in gene regulation
Naomi M. Pacalin, Zachary Steinhart, Quanming Shi, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 11
Enhancer cooperativity can compensate for loss of activity over large genomic distances
Henry Thomas, Songjie Feng, Felix Haslhofer, et al.
Molecular Cell (2024)
Open Access | Times Cited: 9
Synergy between cis-regulatory elements can render cohesin dispensable for distal enhancer function
Karissa Hansen, Annie S. Adachi, Luca Braccioli, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
Functional maps of a genomic locus reveal confinement of an enhancer by its target gene
M Eder, Christina J.I. Moene, Lise Dauban, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Enhancers: A Focus on Synthetic Biology and Correlated Gene Expression
Christopher H. Bohrer, Nadezda A. Fursova, Daniel R. Larson
ACS Synthetic Biology (2024)
Closed Access | Times Cited: 6
What is an enhancer?
Henry Thomas, Christa Buecker
BioEssays (2023) Vol. 45, Iss. 10
Open Access | Times Cited: 12
Live-cell imaging of chromatin contacts opens a new window into chromatin dynamics
Jente van Staalduinen, Thomas van Staveren, Frank Grosveld, et al.
Epigenetics & Chromatin (2023) Vol. 16, Iss. 1
Open Access | Times Cited: 12
CREEPY: CRISPR-mediated editing of synthetic episomes in yeast
Yu Zhao, Camila Coelho, Stephanie Lauer, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 13, pp. e72-e72
Open Access | Times Cited: 11
Large-scale analysis of the integration of enhancer-enhancer signals by promoters
Miguel Martinez-Ara, Federico Comoglio, Bas van Steensel
eLife (2023) Vol. 12
Open Access | Times Cited: 11
Bridging the gap: How enhancers cooperate to regulate gene expression over large genomic distances
Dimitra Tsouraki, A. Marieke Oudelaar
Molecular Cell (2025) Vol. 85, Iss. 2, pp. 199-201
Closed Access
Relating DNA sequence, organization, and function
Geoffrey Fudenberg, Vijay Ramani
Science (2025) Vol. 387, Iss. 6734, pp. 580-580
Closed Access
Iterative improvement of deep learning models using synthetic regulatory genomics
André M. Ribeiro-dos-Santos, Matthew T. Maurano
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Enhancer control of promoter activity and variabilityviafrequency modulation of clustered transcriptional bursts
Jana Tünnermann, Grégory Roth, Julie Cramard, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Genomic context sensitizes regulatory elements to genetic disruption
Raquel Ordóñez, Weimin Zhang, Gwen Ellis, et al.
Molecular Cell (2024) Vol. 84, Iss. 10, pp. 1842-1854.e7
Open Access | Times Cited: 3
A Sox2 Enhancer Cluster Regulates Region-Specific Neural Fates from Mouse Embryonic Stem Cells
Ian C. Tobias, Sakthi D. Moorthy, Virlana M. Shchuka, et al.
G3 Genes Genomes Genetics (2025)
Open Access
Enhancer cooperativity can compensate for loss of activity over large genomic distances
Henry Thomas, Songjie Feng, Marie L. Huber, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Closed Access | Times Cited: 6
Integrative approaches to study enhancer–promoter communication
Pia Mach, Luca Giorgetti
Current Opinion in Genetics & Development (2023) Vol. 80, pp. 102052-102052
Open Access | Times Cited: 5
Topology regulatory elements: From shaping genome architecture to gene regulation
Liangfu Chen, Hannah K. Long
Current Opinion in Structural Biology (2023) Vol. 83, pp. 102723-102723
Open Access | Times Cited: 5
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