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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Effect of imputation on gene network reconstruction from single-cell RNA-seq data
Lam-Ha Ly, Martin Vingron
Patterns (2021) Vol. 3, Iss. 2, pp. 100414-100414
Open Access | Times Cited: 24

Showing 24 citing articles:

Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
Zhi‐Jie Cao, Ge Gao
Nature Biotechnology (2022) Vol. 40, Iss. 10, pp. 1458-1466
Open Access | Times Cited: 315
Gene regulatory network inference in the era of single-cell multi-omics
Pau Badia-i-Mompel, Lorna Wessels, Sophia Müller‐Dott, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 11, pp. 739-754
Closed Access | Times Cited: 187
Mosaic integration and knowledge transfer of single-cell multimodal data with MIDAS
眞智子 平賀, Shuofeng Hu, Yaowen Chen, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 10, pp. 1594-1605
Open Access | Times Cited: 24
MINI-EX: Integrative inference of single-cell gene regulatory networks in plants
Camilla Ferrari, Nicolás Manosalva Pérez, Klaas Vandepoele
Molecular Plant (2022) Vol. 15, Iss. 11, pp. 1807-1824
Open Access | Times Cited: 31
Evaluating Proteomics Imputation Methods with Improved Criteria
Lincoln Harris, William E. Fondrie, Sewoong Oh, et al.
Journal of Proteome Research (2023) Vol. 22, Iss. 11, pp. 3427-3438
Open Access | Times Cited: 15
EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics
Tongxuan Lv, Ying Zhang, Mei Li, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 4
geneRNIB: a living benchmark for gene regulatory network inference
Jalil Nourisa, Antoine Passemiers, Marco Stock, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Computational approaches to understand transcription regulation in development
Maarten van der Sande, Siebren Frölich, Simon J. van Heeringen
Biochemical Society Transactions (2023) Vol. 51, Iss. 1, pp. 1-12
Open Access | Times Cited: 7
scCAN: Clustering With Adaptive Neighbor-Based Imputation Method for Single-Cell RNA-Seq Data
S.H. Dong, Yuansheng Liu, Yongshun Gong, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics (2024) Vol. 21, Iss. 1, pp. 95-105
Closed Access | Times Cited: 2
COFFEE: consensus single cell-type specific inference for gene regulatory networks
Musaddiq K Lodi, Anna Chernikov, Preetam Ghosh
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 2
scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes
Junha Cha, Jiwon Yu, Jae-Won Cho, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. 2, pp. e8-e8
Open Access | Times Cited: 10
Learning cell-specific networks from dynamics and geometry of single cells
Stephen Y. Zhang, Michael P. H. Stumpf
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Evaluating proteomics imputation methods with improved criteria
Lincoln Harris, William E. Fondrie, Sewoong Oh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
COFFEE: CONSENSUS SINGLE CELL-TYPE SPECIFIC INFERENCE FOR GENE REGULATORY NETWORKS
Musaddiq K Lodi, Anna Chernikov, Preetam Ghosh
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Augmented Doubly Robust Post-Imputation Inference for Proteomic data
Haeun Moon, Jin‐Hong Du, Jing Lei, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis
Junha Cha, Michael Lavi, Junhan Kim, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2296-2304
Open Access | Times Cited: 2
Benchmarking imputation methods for network inference using a novel method of synthetic scRNA-seq data generation
Ayoub Lasri, Vahid Shahrezaei, Marc Sturrock
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 4
Advances in computational and experimental approaches for deciphering transcriptional regulatory networks
Camille Moeckel, Ioannis Mouratidis, Nikol Chantzi, et al.
BioEssays (2024) Vol. 46, Iss. 7
Open Access
SIGRN: Inferring Gene Regulatory Network with Soft Introspective Variational Autoencoders
Rongyuan Li, Jingli Wu, Gaoshi Li, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 23, pp. 12741-12741
Open Access
IntroGRN: Gene Regulatory Network Inference from Single-Cell RNA Data Based on Introspective VAE
Rongyuan Li, Jingli Wu, Gaoshi Li, et al.
Lecture notes in computer science (2024), pp. 427-438
Closed Access
Scalable identification of lineage-specific gene regulatory networks from metacells with NetID
Weixu Wang, Yichen Wang, Ruiqi Lyu, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access
MINI-EX: Integrative inference of single-cell gene regulatory networks in plants
Camilla Ferrari, Nicolás Manosalva Pérez, Klaas Vandepoele
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
In search of a Drosophila core cellular network with single-cell transcriptome data
Ming Yang, Benjamin R. Harrison, Daniel Promislow
G3 Genes Genomes Genetics (2022) Vol. 12, Iss. 10
Open Access | Times Cited: 1
MIDAS: a deep generative model for mosaic integration and knowledge transfer of single-cell multimodal data
眞智子 平賀, Yaowen Chen, Shuofeng Hu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
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