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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A multi-platform reference for somatic structural variation detection
Jose Espejo Valle-Inclán, Nicolle Besselink, Ewart de Bruijn, et al.
Cell Genomics (2022) Vol. 2, Iss. 6, pp. 100139-100139
Open Access | Times Cited: 29

Showing 1-25 of 29 citing articles:

JBrowse 2: a modular genome browser with views of synteny and structural variation
Colin Diesh, Garrett J Stevens, Peter Xie, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 590
GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing
Daniel Cameron, Jonathan Baber, Charles Shale, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 130
Detection of mosaic and population-level structural variants with Sniffles2
Moritz Smolka, Luis F. Paulin, Christopher M. Grochowski, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 10, pp. 1571-1580
Open Access | Times Cited: 129
Comprehensive Structural Variant Detection: From Mosaic to Population-Level
Moritz Smolka, Luis F. Paulin, Christopher M. Grochowski, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 92
Unscrambling cancer genomes via integrated analysis of structural variation and copy number
Charles Shale, Daniel Cameron, Jonathan Baber, et al.
Cell Genomics (2022) Vol. 2, Iss. 4, pp. 100112-100112
Open Access | Times Cited: 66
Implementation of Whole-Genome and Transcriptome Sequencing Into Clinical Cancer Care
Edwin Cuppen, Olivier Elemento, Richard Rosenquist, et al.
JCO Precision Oncology (2022), Iss. 6
Open Access | Times Cited: 54
Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv
Yuichi Shiraishi, Junji Koya, Kenichi Chiba, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 14, pp. e74-e74
Open Access | Times Cited: 34
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads
Ayse Keskus, Asher Bryant, Tanveer Ahmad, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
Genomic variant benchmark: if you cannot measure it, you cannot improve it
Sina Majidian, Daniel Paiva Agustinho, Chen-Shan Chin, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 20
Towards routine chromosome-scale haplotype-resolved reconstruction in cancer genomics
Shilpa Garg
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 17
JBrowse 2: A modular genome browser with views of synteny and structural variation
Colin Diesh, Garrett J Stevens, Peter Xie, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 19
SAVANA: reliable analysis of somatic structural variants and copy number aberrations in clinical samples using long-read sequencing
Hillary Elrick, Carolin M. Sauer, Jose Espejo Valle-Inclán, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Benchmarking long-read structural variant calling tools and combinations for detecting somatic variants in cancer genomes
Sevtap Aydın, K. Yilmaz, Ahmet Acar
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing
Ayşe Gökçe Keşküş, Asher Bryant, Tanveer Ahmad, et al.
Nature Biotechnology (2025)
Closed Access
The benefit of a complete reference genome for cancer structural variant analysis
Luis F. Paulin, Jeremy Fan, Kieran O’Neill, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples
Shuangxi Ji, Tong Zhu, Ankit Sethia, et al.
Genome Research (2024)
Open Access | Times Cited: 1
Comprehensive identification of pathogenic variants in retinoblastoma by long- and short-read sequencing
Jingjing Zheng, Tong Li, Huijing Ye, et al.
Cancer Letters (2024) Vol. 598, pp. 217121-217121
Open Access | Times Cited: 1
SAVANA: reliable analysis of somatic structural variants and copy number aberrations in clinical samples using long-read sequencing
Isidro Cortés‐Ciriano, Hillary Elrick, Carolin M. Sauer, et al.
Research Square (Research Square) (2024)
Open Access | Times Cited: 1
Deciphering complex breakage-fusion-bridge genome rearrangements with Ambigram
Chaohui Li, Lingxi Chen, Guangze Pan, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 3
Detecting Somatic Mutations Without Matched Normal Samples Using Long Reads
Jared T. Simpson
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Long-range somatic structural variation calling from matched tumor-normal co-assembly graphs
Megan K. Le, Qian Qin, Heng Li
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
High prevalence of chromosomal rearrangements and LINE retrotranspositions detected in formalin-fixed paraffin-embedded colorectal cancer tissue
Carmen Rubio-Alarcón, Ellen Stelloo, Daan C.L. Vessies, et al.
Journal of Molecular Diagnostics (2024)
Open Access
Homologous recombination deficiency (HRD) diagnostics: underlying mechanisms and new perspectives
Andrey Kechin, Maksim Koryukov, Regina Mikheeva, et al.
Cancer and Metastasis Reviews (2024) Vol. 44, Iss. 1
Closed Access
An Ensemble Method for Calling and Ranking Somatic Structural Variants Using Long and Short Reads
Walter Gallego Gomez, Elena Grassi, Andrea Bertotti, et al.
(2024), pp. 62-69
Closed Access
GASOLINE: detecting germline and somatic structural variants from long-reads data
Alberto Magi, Gianluca Mattei, Alessandra Mingrino, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 1
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