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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Improving Protein–Peptide Docking Results via Pose-Clustering and Rescoring with a Combined Knowledge-Based and MM–GBSA Scoring Function
Huanyu Tao, Yanjun Zhang, Sheng‐You Huang
Journal of Chemical Information and Modeling (2020) Vol. 60, Iss. 4, pp. 2377-2387
Closed Access | Times Cited: 40

Showing 1-25 of 40 citing articles:

What is the current value of MM/PBSA and MM/GBSA methods in drug discovery?
Tiziano Tuccinardi
Expert Opinion on Drug Discovery (2021) Vol. 16, Iss. 11, pp. 1233-1237
Open Access | Times Cited: 172
Computational approaches for the design of modulators targeting protein-protein interactions
Ashfaq Ur Rehman, Beenish Khurshid, Yasir Ali, et al.
Expert Opinion on Drug Discovery (2023) Vol. 18, Iss. 3, pp. 315-333
Open Access | Times Cited: 33
Predicting Protein–Peptide Interactions: Benchmarking Deep Learning Techniques and a Comparison with Focused Docking
Sudhanshu Shanker, Michel F. Sanner
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 10, pp. 3158-3170
Closed Access | Times Cited: 24
NLDock: a Fast Nucleic Acid–Ligand Docking Algorithm for Modeling RNA/DNA–Ligand Complexes
Yuyu Feng, Keqiong Zhang, Qilong Wu, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 9, pp. 4771-4782
Closed Access | Times Cited: 45
Fludarabine, a Potential DNA-Dependent RNA Polymerase Inhibitor, as a Prospective Drug against Monkeypox Virus: A Computational Approach
Hisham N. Altayb
Pharmaceuticals (2022) Vol. 15, Iss. 9, pp. 1129-1129
Open Access | Times Cited: 36
Investigation of beta-lactoglobulin derived bioactive peptides against SARS-CoV-2 (COVID-19): In silico analysis
Bilal Çakır, Betül Okuyan, Göksel Şener, et al.
European Journal of Pharmacology (2020) Vol. 891, pp. 173781-173781
Open Access | Times Cited: 46
Computational Modeling as a Tool to Investigate PPI: From Drug Design to Tissue Engineering
Juan J. Pérez, Román A. Pérez, Alberto Pérez
Frontiers in Molecular Biosciences (2021) Vol. 8
Open Access | Times Cited: 33
Modelling peptide–protein complexes: docking, simulations and machine learning
Arup Mondal, Liwei Chang, Alberto Pérez
QRB Discovery (2022) Vol. 3
Open Access | Times Cited: 25
ITScore-NL: An Iterative Knowledge-Based Scoring Function for Nucleic Acid–Ligand Interactions
Yuyu Feng, Sheng‐You Huang
Journal of Chemical Information and Modeling (2020) Vol. 60, Iss. 12, pp. 6698-6708
Closed Access | Times Cited: 35
Thermodynamic Dissection of the Intercalation Binding Process of Doxorubicin to dsDNA with Implications of Ionic and Solvent Effects
Bahaa Jawad, Lokendra Poudel, Rudolf Podgornik, et al.
The Journal of Physical Chemistry B (2020) Vol. 124, Iss. 36, pp. 7803-7818
Closed Access | Times Cited: 33
From Apo to Ligand-Bound: Unraveling PPARγ-LBD Conformational Shifts via Advanced Molecular Dynamics
Emanuele Falbo, Pietro Delre, Antonio Lavecchia
ACS Omega (2025)
Open Access
Main methods and tools for peptide development based on protein-protein interactions (PPIs).
Javiera Baeza, Mauricio Bedoya, Pablo Cruz, et al.
Biochemical and Biophysical Research Communications (2025), pp. 151623-151623
Closed Access
Antimicrobial Peptide Recognition Motif of the Substrate Binding Protein SapA from Nontypeable Haemophilus influenzae
Kristen G. Rivera, Kari J. Tanaka, Evan R. Buechel, et al.
Biochemistry (2024) Vol. 63, Iss. 3, pp. 294-311
Open Access | Times Cited: 3
Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches
Adem Ozleyen, Gizem Nur Duran, Serhat Dönmez, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Based on the Virtual Screening of Multiple Pharmacophores, Docking and Molecular Dynamics Simulation Approaches toward the Discovery of Novel HPPD Inhibitors
Ying Fu, Tong Ye, Yongxuan Liu, et al.
International Journal of Molecular Sciences (2020) Vol. 21, Iss. 15, pp. 5546-5546
Open Access | Times Cited: 27
Rational design, synthesis and structural characterization of peptides and peptidomimetics to target Hsp90/Cdc37 interaction for treating hepatocellular carcinoma
Surya Sukumaran, Mingdian Tan, Shulamit Fluss Ben-Uliel, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 3159-3172
Open Access | Times Cited: 8
A novel multi-objective metaheuristic algorithm for protein-peptide docking and benchmarking on the LEADS-PEP dataset
Yosef Masoudi-Sobhanzadeh, Behzad Jafari, Sepideh Parvizpour, et al.
Computers in Biology and Medicine (2021) Vol. 138, pp. 104896-104896
Closed Access | Times Cited: 20
QPH-FR: A Novel Quinoa Peptide Enhances Chemosensitivity by Targeting Leucine-Rich Repeat-Containing G Protein-Coupled Receptor 5 in Colorectal Cancer
Jinmiao Tian, Lichao Zhang, Xiaoqin La, et al.
Journal of Agricultural and Food Chemistry (2024) Vol. 72, Iss. 31, pp. 17417-17430
Closed Access | Times Cited: 2
Improving Docking Power for Short Peptides Using Random Forest
Michel F. Sanner, Leonard Dieguez, Stefano Forli, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 6, pp. 3074-3090
Open Access | Times Cited: 15
Identification of 4‐hydroxyphenylpyruvate dioxygenase inhibitors by virtual screening, molecular docking, molecular dynamic simulation
Juan Shi, Lixia Zhao, Jiayu Wang, et al.
Journal of the Science of Food and Agriculture (2023) Vol. 103, Iss. 11, pp. 5547-5559
Closed Access | Times Cited: 6
Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond
Huanyu Tao, Qilong Wu, Xuejun Zhao, et al.
Journal of Cheminformatics (2022) Vol. 14, Iss. 1
Open Access | Times Cited: 9
Docking cyclic peptides formed by a disulfide bond through a hierarchical strategy
Huanyu Tao, Xuejun Zhao, Keqiong Zhang, et al.
Bioinformatics (2022) Vol. 38, Iss. 17, pp. 4109-4116
Closed Access | Times Cited: 9
Allergenicity evaluation of fermented milk prepared by co-fermentation of Lactobacillus plantarum 7-2 and commercial starters after in vitro digestive
Yunpeng Xu, Hongxin Wang, Guangqing Mu, et al.
Food Chemistry X (2023) Vol. 20, pp. 100911-100911
Open Access | Times Cited: 5
A dual-population multi-objective evolutionary algorithm driven by generative adversarial networks for benchmarking and protein-peptide docking
Honglei Cheng, Gai‐Ge Wang, Liyan Chen, et al.
Computers in Biology and Medicine (2023) Vol. 168, pp. 107727-107727
Closed Access | Times Cited: 4
Main methods and tools for peptide development based on protein-protein interactions (PPIs)
Javiera Baeza, Pablo Cruz, Paola Ojeda, et al.
(2024)
Open Access | Times Cited: 1
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