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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Ligand-Binding-Site Refinement to Generate Reliable Holo Protein Structure Conformations from Apo Structures
Hugo Guterres, Sang‐Jun Park, Wei Jiang, et al.
Journal of Chemical Information and Modeling (2020) Vol. 61, Iss. 1, pp. 535-546
Open Access | Times Cited: 40

Showing 1-25 of 40 citing articles:

How good are AlphaFold models for docking-based virtual screening?
Valeria Scardino, Juan I. Di Filippo, Claudio N. Cavasotto
iScience (2022) Vol. 26, Iss. 1, pp. 105920-105920
Open Access | Times Cited: 119
Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery
Yuqi Zhang, Márton Vass, Da Shi, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 6, pp. 1656-1667
Closed Access | Times Cited: 68
Review on therapeutic potential of peptides: Advancements in synthesis methods, linear and cyclic peptides, and strategies for overcoming challenges
Naurin Lalani, Sunil Tivari, Vicky Jain, et al.
Peptide Science (2024) Vol. 116, Iss. 4
Closed Access | Times Cited: 9
An Overview of Crosslinked Enzyme Aggregates: Concept of Development and Trends of Applications
Oumaima Maroua Bouguerra, Roswanira Abdul Wahab, Fahrul Huyop, et al.
Applied Biochemistry and Biotechnology (2024) Vol. 196, Iss. 9, pp. 5711-5739
Closed Access | Times Cited: 8
Modeling Boltzmann-weighted structural ensembles of proteins using artificial intelligence–based methods
Akashnathan Aranganathan, Xinyu Gu, Dedi Wang, et al.
Current Opinion in Structural Biology (2025) Vol. 91, pp. 103000-103000
Open Access | Times Cited: 1
Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery
Yuqi Zhang, Marton Vass, Da Shi, et al.
(2022)
Open Access | Times Cited: 26
In silico study to identify novel NEK7 inhibitors from natural sources by a combination strategy
Heng Zhang, Chenhong Lu, Qilong Yao, et al.
Molecular Diversity (2024)
Closed Access | Times Cited: 5
Resources and computational strategies to advance small molecule SARS-CoV-2 discovery: Lessons from the pandemic and preparing for future health crises
Natesh Singh, Bruno O. Villoutreix
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 2537-2548
Open Access | Times Cited: 28
Heat Shock Protein 90 (HSP90) Inhibitors as Anticancer Medicines: A Review on the Computer-Aided Drug Discovery Approaches over the Past Five Years
Ayanda M. Magwenyane, Samuel Chima Ugbaja, Daniel G. Amoako, et al.
Computational and Mathematical Methods in Medicine (2022) Vol. 2022, pp. 1-20
Open Access | Times Cited: 22
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
eLife (2024) Vol. 13
Open Access | Times Cited: 4
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
(2024)
Open Access | Times Cited: 4
Improving the Reliability of Language Model-Predicted Structures as Docking Targets through Geometric Graph Learning
Chao Shen, Xiaoqi Han, Heng Cai, et al.
Journal of Medicinal Chemistry (2025)
Closed Access
Discovery of thiophen-2-ylmethylene bis-dimedone derivatives as novel WRN inhibitors for treating cancers with microsatellite instability
Hwasun Yang, Miso Kang, Seonyeong Jang, et al.
Bioorganic & Medicinal Chemistry (2024) Vol. 100, pp. 117588-117588
Closed Access | Times Cited: 3
Evaluation of AlphaFold2 Structures for Hit Identification across Multiple Scenarios
Shukai Gu, Yuwei Yang, Yihao Zhao, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 9, pp. 3630-3639
Closed Access | Times Cited: 3
CHARMM-GUI-Based Induced Fit Docking Workflow to Generate Reliable Protein–Ligand Binding Modes
Hugo Guterres, Wonpil Im
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 15, pp. 4772-4779
Open Access | Times Cited: 8
Holo Protein Conformation Generation from Apo Structures by Ligand Binding Site Refinement
Jinze Zhang, Hao Li, Xuejun Zhao, et al.
Journal of Chemical Information and Modeling (2022) Vol. 62, Iss. 22, pp. 5806-5820
Closed Access | Times Cited: 14
AlphaFold for a medicinal chemist: tool or toy?
Yan A. Ivanenkov, Sergei A. Evteev, А. В. Малышев, et al.
Russian Chemical Reviews (2024) Vol. 93, Iss. 3, pp. RCR5107-RCR5107
Closed Access | Times Cited: 2
Protein surface engineering and interaction studies of maltogenic amylase towards improved enzyme immobilisation
Nardiah Rizwana Jaafar, Nashriq Jailani, Roshanida A. Rahman, et al.
International Journal of Biological Macromolecules (2022) Vol. 213, pp. 70-82
Closed Access | Times Cited: 10
CHARMM-GUI Ligand Designer for Template-Based Virtual Ligand Design in a Binding Site
Hugo Guterres, Sang‐Jun Park, Yiwei Cao, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 11, pp. 5336-5342
Open Access | Times Cited: 12
CHARMM-GUI LBS Finder & Refiner for Ligand Binding Site Prediction and Refinement
Hugo Guterres, Sang‐Jun Park, Han Zhang, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 8, pp. 3744-3751
Open Access | Times Cited: 11
PDBspheres: a method for finding 3D similarities in local regions in proteins
Adam Zemła, Jonathan Allen, Daniel Kirshner, et al.
NAR Genomics and Bioinformatics (2022) Vol. 4, Iss. 4
Open Access | Times Cited: 8
Improving the Modeling of Extracellular Ligand Binding Pockets in RosettaGPCR for Conformational Selection
Fabian Ließmann, Georg Künze, Jens Meiler
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 9, pp. 7788-7788
Open Access | Times Cited: 4
Structure-Based Discovery of Mouse Trace Amine-Associated Receptor 5 Antagonists
Alessandro Nicoli, Verena Weber, Carlotta Bon, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 21, pp. 6667-6680
Open Access | Times Cited: 4
Prediction of large conformational changes of a protein binding pocket associated with ligand binding
K Sakai, Takashi Ishida
(2024)
Open Access | Times Cited: 1
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
eLife (2024) Vol. 13
Open Access | Times Cited: 1
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