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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Mutation-Induced Impacts on the Switch Transformations of the GDP- and GTP-Bound K-Ras: Insights from Multiple Replica Gaussian Accelerated Molecular Dynamics and Free Energy Analysis
Jianzhong Chen, Shaolong Zhang, Wei Wang, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 4, pp. 1954-1969
Closed Access | Times Cited: 128

Showing 1-25 of 128 citing articles:

Decoding the Identification Mechanism of an SAM-III Riboswitch on Ligands through Multiple Independent Gaussian-Accelerated Molecular Dynamics Simulations
Jianzhong Chen, Qingkai Zeng, Wei Wang, et al.
Journal of Chemical Information and Modeling (2022) Vol. 62, Iss. 23, pp. 6118-6132
Closed Access | Times Cited: 104
Dynamic regulation of RAS and RAS signaling
Walter Kölch, Dénes Berta, Edina Rosta
Biochemical Journal (2023) Vol. 480, Iss. 1, pp. 1-23
Open Access | Times Cited: 56
Conformations of KRAS4B Affected by Its Partner Binding and G12C Mutation: Insights from GaMD Trajectory-Image Transformation-Based Deep Learning
Jianzhong Chen, Jian Wang, Wanchun Yang, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 17, pp. 6880-6898
Closed Access | Times Cited: 35
Molecular Mechanism of Phosphorylation-Mediated Impacts on the Conformation Dynamics of GTP-Bound KRAS Probed by GaMD Trajectory-Based Deep Learning
Jianzhong Chen, Jian Wang, Wanchun Yang, et al.
Molecules (2024) Vol. 29, Iss. 10, pp. 2317-2317
Open Access | Times Cited: 20
Conformation states of DYRK1A affected by phosphorylation: Explorations from GaMD simulations and deep learning
Jian Wang, Feng Wang, Wanchun Yang, et al.
Journal of Molecular Liquids (2025) Vol. 424, pp. 127066-127066
Closed Access | Times Cited: 2
A General Picture of Cucurbit[8]uril Host–Guest Binding
Zhaoxi Sun, Zhe Huai, Qiaole He, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 12, pp. 6107-6134
Open Access | Times Cited: 57
Delineating the activation mechanism and conformational landscape of a class B G protein-coupled receptor glucagon receptor
Ying Wang, Mingyu Li, Wenqi Liang, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 628-639
Open Access | Times Cited: 49
Binding Mechanism of Inhibitors to BRD4 and BRD9 Decoded by Multiple Independent Molecular Dynamics Simulations and Deep Learning
Jian Wang, Wanchun Yang, Lu Zhao, et al.
Molecules (2024) Vol. 29, Iss. 8, pp. 1857-1857
Open Access | Times Cited: 13
Roles of Accelerated Molecular Dynamics Simulations in Predictions of Binding Kinetic Parameters
Jianzhong Chen, Wei Wang, Haibo Sun, et al.
Mini-Reviews in Medicinal Chemistry (2024) Vol. 24, Iss. 14, pp. 1323-1333
Closed Access | Times Cited: 9
Deciphering allosteric mechanisms in KRAS activation: insights from GTP-induced conformational dynamics and interaction network reorganization
Dongmei Zhao, Jingyu Yang, Meng-Ting Liu, et al.
RSC Advances (2025) Vol. 15, Iss. 3, pp. 2261-2274
Open Access | Times Cited: 1
Insights into phosphorylation-induced influences on conformations and inhibitor binding of CDK6 through GaMD trajectory-based deep learning
Lu Zhao, Jian Wang, Wanchun Yang, et al.
Physical Chemistry Chemical Physics (2025)
Closed Access | Times Cited: 1
Conformational transformation of switch domains in GDP/K-Ras induced by G13 mutants: An investigation through Gaussian accelerated molecular dynamics simulations and principal component analysis
Jianzhong Chen, Lifei Wang, Wei Wang, et al.
Computers in Biology and Medicine (2021) Vol. 135, pp. 104639-104639
Closed Access | Times Cited: 46
Conformational Stability and Denaturation Processes of Proteins Investigated by Electrophoresis under Extreme Conditions
Patrick Masson, Sofya V. Lushchekina
Molecules (2022) Vol. 27, Iss. 20, pp. 6861-6861
Open Access | Times Cited: 38
Q61 mutant-mediated dynamics changes of the GTP-KRAS complex probed by Gaussian accelerated molecular dynamics and free energy landscapes
Jianzhong Chen, Qingkai Zeng, Wei Wang, et al.
RSC Advances (2022) Vol. 12, Iss. 3, pp. 1742-1757
Open Access | Times Cited: 33
Binding selectivity-dependent molecular mechanism of inhibitors towards CDK2 and CDK6 investigated by multiple short molecular dynamics and free energy landscapes
Lifei Wang, Dan Lü, Yan Wang, et al.
Journal of Enzyme Inhibition and Medicinal Chemistry (2022) Vol. 38, Iss. 1, pp. 84-99
Open Access | Times Cited: 29
Probing mutation-induced conformational transformation of the GTP/M-RAS complex through Gaussian accelerated molecular dynamics simulations
Huayin Bao, Wei Wang, Haibo Sun, et al.
Journal of Enzyme Inhibition and Medicinal Chemistry (2023) Vol. 38, Iss. 1
Open Access | Times Cited: 22
Accelerating therapeutic protein design with computational approaches toward the clinical stage
Zhidong Chen, Xinpei Wang, Xu Chen, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2909-2926
Open Access | Times Cited: 22
Unveiling Conformational States of CDK6 Caused by Binding of Vcyclin Protein and Inhibitor by Combining Gaussian Accelerated Molecular Dynamics and Deep Learning
Lu Zhao, Jian Wang, Wanchun Yang, et al.
Molecules (2024) Vol. 29, Iss. 11, pp. 2681-2681
Open Access | Times Cited: 8
Unveiling the State Transition Mechanisms of Ras Proteins through Enhanced Sampling and QM/MM Simulations
Fangchen Hu, Yiqiu Wang, Juan Zeng, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 6, pp. 1418-1427
Closed Access | Times Cited: 7
In silico design of multipoint mutants for enhanced performance of Thermomyces lanuginosus lipase for efficient biodiesel production
Jinsha Huang, Xiaoman Xie, Wanlin Zheng, et al.
Biotechnology for Biofuels and Bioproducts (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 7
In Silico Prediction of New Inhibitors for Kirsten Rat Sarcoma G12D Cancer Drug Target Using Machine Learning-Based Virtual Screening, Molecular Docking, and Molecular Dynamic Simulation Approaches
Amar Ajmal, Muhammad Danial, Maryam Zulfat, et al.
Pharmaceuticals (2024) Vol. 17, Iss. 5, pp. 551-551
Open Access | Times Cited: 7
DON/DRP‐104 as potent serine protease inhibitors implicated in SARS‐CoV‐2 infection: Comparative binding modes with human TMPRSS2 and novel therapeutic approach
Ernest Oduro‐Kwateng, Mahmoud E. S. Soliman
Journal of Cellular Biochemistry (2024)
Open Access | Times Cited: 6
Binding mechanism of inhibitors to SARS-CoV-2 main protease deciphered by multiple replica molecular dynamics simulations
Shanshan Liang, Xinguo Liu, Shaolong Zhang, et al.
Physical Chemistry Chemical Physics (2021) Vol. 24, Iss. 3, pp. 1743-1759
Closed Access | Times Cited: 37
Binding of Inhibitors to BACE1 Affected by pH-Dependent Protonation: An Exploration from Multiple Replica Gaussian Accelerated Molecular Dynamics and MM-GBSA Calculations
Jianzhong Chen, Shaolong Zhang, Wei Wang, et al.
ACS Chemical Neuroscience (2021) Vol. 12, Iss. 14, pp. 2591-2607
Closed Access | Times Cited: 36
Binding mechanism of inhibitors to p38α MAP kinase deciphered by using multiple replica Gaussian accelerated molecular dynamics and calculations of binding free energies
Jianzhong Chen, Wei Wang, Haibo Sun, et al.
Computers in Biology and Medicine (2021) Vol. 134, pp. 104485-104485
Closed Access | Times Cited: 35
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