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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Exploring Kinase Asp-Phe-Gly (DFG) Loop Conformational Stability with AlphaFold2-RAVE
Bodhi P. Vani, Akashnathan Aranganathan, Pratyush Tiwary
Journal of Chemical Information and Modeling (2023) Vol. 64, Iss. 7, pp. 2789-2797
Open Access | Times Cited: 24

Showing 24 citing articles:

AlphaFold predictions of fold-switched conformations are driven by structure memorization
Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 31
Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction
Devlina Chakravarty, Myeongsang Lee, Lauren L. Porter
Current Opinion in Structural Biology (2025) Vol. 90, pp. 102973-102973
Open Access | Times Cited: 8
Information Bottleneck Approach for Markov Model Construction
Dedi Wang, Yunrui Qiu, Eric R. Beyerle, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 12, pp. 5352-5367
Open Access | Times Cited: 12
Modeling Boltzmann-weighted structural ensembles of proteins using artificial intelligence–based methods
Akashnathan Aranganathan, Xinyu Gu, Dedi Wang, et al.
Current Opinion in Structural Biology (2025) Vol. 91, pp. 103000-103000
Open Access | Times Cited: 1
Sequence clustering confounds AlphaFold2
Joseph W. Schafer, Myeongsang Lee, Devlina Chakravarty, et al.
Nature (2025) Vol. 638, Iss. 8051, pp. E8-E12
Open Access | Times Cited: 1
AlphaFold2 has more to learn about protein energy landscapes
Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 19
Investigating the conformational landscape of AlphaFold2-predicted protein kinase structures
Carmen Al-Masri, Francesco Trozzi, Shu-Hang Lin, et al.
Bioinformatics Advances (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 17
A comprehensive exploration of the druggable conformational space of protein kinases using AI-predicted structures
Noah B. Herrington, Yan Chak Li, David Stein, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 7, pp. e1012302-e1012302
Open Access | Times Cited: 7
Calculating Protein–Ligand Residence Times through State Predictive Information Bottleneck Based Enhanced Sampling
Suemin Lee, Dedi Wang, Markus A. Seeliger, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 14, pp. 6341-6349
Open Access | Times Cited: 6
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases
Joan Gizzio, Abhishek Thakur, Allan Haldane, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
ColabFold predicts alternative protein structures from single sequences, coevolution unnecessary for AF-cluster
Lauren L. Porter, Devlina Chakravarty, Joseph W. Schafer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases
Joan Gizzio, Abhishek Thakur, Allan Haldane, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Editorial: Machine Learning in Bio-cheminformatics
Kenneth M. Merz, Guo‐Wei Wei, Feng Zhu
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 7, pp. 2125-2128
Closed Access | Times Cited: 5
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
eLife (2024) Vol. 13
Open Access | Times Cited: 4
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
(2024)
Open Access | Times Cited: 4
AlphaFold2's training set powers its predictions of some fold‐switched conformations
Joseph W. Schafer, Lauren L. Porter
Protein Science (2025) Vol. 34, Iss. 4
Open Access
Augmenting Human Expertise in Weighted Ensemble Simulations through Deep Learning-Based Information Bottleneck
Dedi Wang, Pratyush Tiwary
Journal of Chemical Theory and Computation (2024)
Open Access | Times Cited: 3
Structures, dynamics, complexes, and functions: From classic computation to artificial intelligence
Elena Frasnetti, A Magni, Matteo Castelli, et al.
Current Opinion in Structural Biology (2024) Vol. 87, pp. 102835-102835
Open Access | Times Cited: 2
Graph Neural Network-State Predictive Information Bottleneck (GNN-SPIB) approach for learning molecular thermodynamics and kinetics
Ziyue Zou, Dedi Wang, Pratyush Tiwary
Digital Discovery (2024) Vol. 4, Iss. 1, pp. 211-221
Open Access | Times Cited: 2
Calculating Protein-Ligand Residence Times Through State Predictive Information Bottleneck based Enhanced Sampling
Suemin Lee, Dedi Wang, Markus A. Seeliger, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases
Ronald M. Levy, Joan Gizzio, Abhishek Thakur, et al.
Research Square (Research Square) (2024)
Open Access | Times Cited: 1
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
eLife (2024) Vol. 13
Open Access | Times Cited: 1
Conditioned Protein Structure Prediction
Tengyu Xie, Zilin Song, Jing Huang
PRX Life (2024) Vol. 2, Iss. 4
Open Access | Times Cited: 1
AlphaFold2's training set powers its predictions of fold-switched conformations
Joseph W. Schafer, Lauren L. Porter
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
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