Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

pyCHARMM: Embedding CHARMM Functionality in a Python Framework
Joshua Buckner, Xiaorong Liu, Arghya Chakravorty, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 12, pp. 3752-3762
Closed Access | Times Cited: 19

Showing 19 citing articles:

CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed
Wonmuk Hwang, Steven L. Austin, Arnaud Blondel, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 41, pp. 9976-10042
Open Access | Times Cited: 22
CHARMM-GUI Multicomponent Assembler for modeling and simulation of complex multicomponent systems
Nathan R. Kern, Jumin Lee, Yeol Kyo Choi, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 25, pp. 6028-6048
Open Access | Times Cited: 9
Exploring the Limits of the Generalized CHARMM and AMBER Force Fields through Predictions of Hydration Free Energy of Small Molecules
Arghya Chakravorty, Azam Hussain, Luis F. Cervantes, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 10, pp. 4089-4101
Closed Access | Times Cited: 5
PhysNet meets CHARMM: A framework for routine machine learning/molecular mechanics simulations
K. Song, Silvan Käser, Kai Töpfer, et al.
The Journal of Chemical Physics (2023) Vol. 159, Iss. 2
Open Access | Times Cited: 12
Fast free energy estimates from λ-dynamics with bias-updated Gibbs sampling
Michael T. Robo, Ryan L. Hayes, Xinqiang Ding, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 11
Metal–Organic Frameworks through the Lens of Artificial Intelligence: A Comprehensive Review
Kevizali Neikha, Амрит Пузари
Langmuir (2024) Vol. 40, Iss. 42, pp. 21957-21975
Closed Access | Times Cited: 4
Navigating the complexities of docking tools with nicotinic receptors and acetylcholine binding proteins in the realm of neonicotinoids
Zakaria Bouchouireb, Damien Olivier‐Jimenez, Titouan Jaunet‐Lahary, et al.
Ecotoxicology and Environmental Safety (2024) Vol. 281, pp. 116582-116582
Open Access | Times Cited: 3
Enhanced Sampling of Buried Charges in Free Energy Calculations Using Replica Exchange with Charge Tempering
Xiaorong Liu, Charles L. Brooks
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 3, pp. 1051-1061
Open Access | Times Cited: 2
Superimposing Ligands with a Ligand Overlay as an Alternate Topology Model for λ-Dynamics-Based Calculations
Michael P. Liesen, Jonah Z. Vilseck
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 46, pp. 11359-11368
Closed Access | Times Cited: 2
: A Toolkit for Autonomous, User-Guided Construction of Machine-Learned Potential Energy Surfaces
Kai Töpfer, Luis Itza Vazquez-Salazar, Markus Meuwly
Computer Physics Communications (2024), pp. 109446-109446
Open Access | Times Cited: 2
FASTDock: A Pipeline for Allosteric Drug Discovery
Furyal Ahmed, Charles L. Brooks
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 22, pp. 7219-7227
Closed Access | Times Cited: 6
Structural modeling of cytokine-receptor-JAK2 signaling complexes using AlphaFold Multimer
Irina D. Pogozheva, Stanislav Cherepanov, Sang‐Jun Park, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Guiding discovery of protein sequence-structure-function modeling
Azam Hussain, Charles L. Brooks
Bioinformatics (2024) Vol. 40, Iss. 1
Open Access | Times Cited: 1
OH-Formation following vibrationally induced reaction dynamics of H2COO
K. Song, Meenu Upadhyay, Markus Meuwly
Physical Chemistry Chemical Physics (2024) Vol. 26, Iss. 16, pp. 12698-12708
Open Access | Times Cited: 1
Accuracy and Reproducibility of Lipari-Szabo Order Parameters From Molecular Dynamics
Thanh T. Lai, Charles L. Brooks
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 44, pp. 10813-10822
Closed Access | Times Cited: 1
Ancestral Sequence Reconstruction to Enable Biocatalytic Synthesis of Azaphilones
Chang-Hwa Chiang, Ye Wang, Azam Hussain, et al.
Journal of the American Chemical Society (2024) Vol. 146, Iss. 44, pp. 30194-30203
Closed Access
FASTDock: A Pipeline for Allosteric Drug Discovery
Furyal Ahmed, Charles L. Brooks
(2023)
Open Access
Guiding Discovery of Protein Sequence-Structure-Function Modeling
Azam Hussain, Charles L. Brooks
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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