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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

QM/MM Molecular Dynamics Simulations Revealed Catalytic Mechanism of Urease
Tôru Saitô, Yu Takano
The Journal of Physical Chemistry B (2022) Vol. 126, Iss. 10, pp. 2087-2097
Open Access | Times Cited: 26

Showing 1-25 of 26 citing articles:

Synergistic Fermentation with Functional Microorganisms Improves Safety and Quality of Traditional Chinese Fermented Foods
Jingya Fan, Guanyi Qu, Datao Wang, et al.
Foods (2023) Vol. 12, Iss. 15, pp. 2892-2892
Open Access | Times Cited: 16
Surface functionalization of graphene nanosheet with poly (l-histidine) and its application in drug delivery: covalent vs non-covalent approaches
Zahra Najafi rad, Farzaneh Farzad, Leila Razavi
Scientific Reports (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 20
Origin of Chemoselectivity of Halohydrin Dehalogenase-Catalyzed Epoxide Ring-Opening Reactions
Qianqian Wang, Jinshuai Song, Donghui Wei
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 11, pp. 4530-4541
Closed Access | Times Cited: 4
Enzymatic degradation of phthalate esters in the environment: Advances, challenges and opportunities
Shengwei Sun, Per‐Olof Syrén
Chemical Engineering Journal (2025), pp. 160640-160640
Closed Access
Modulating phosphate transfer process for promoting phosphorylation activity of acid phosphatase
Kai Linghu, Kangjie Xu, Xinyi Zhao, et al.
Bioresource Technology (2025), pp. 132348-132348
Closed Access
Adaptive Restraints to Accelerate Geometry Optimizations of Large Biomolecular Systems
Mark A. Hix, Alice R. Walker
Journal of Computational Chemistry (2025) Vol. 46, Iss. 12
Closed Access
PyDFT-QMMM: A modular, extensible software framework for DFT-based QM/MM molecular dynamics
John P. Pederson, Jesse G. McDaniel
The Journal of Chemical Physics (2024) Vol. 161, Iss. 3
Closed Access | Times Cited: 3
Challenges in Protein QM/MM Simulations with Intra-Backbone Link Atoms
Alexander Zlobin, Julia Belyaeva, Andrey V. Golovin
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 2, pp. 546-560
Closed Access | Times Cited: 8
Unraveling Binding Mechanism and Stability of Urease Inhibitors: A QM/MM MD Study
Shunya Suenaga, Yu Takano, Tôru Saitô
Molecules (2023) Vol. 28, Iss. 6, pp. 2697-2697
Open Access | Times Cited: 8
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network
Hiroko Kondo, Hiroyuki Iizuka, Gen Masumoto, et al.
Biomolecules (2023) Vol. 13, Iss. 1, pp. 137-137
Open Access | Times Cited: 4
Fluoroquinolone and enoxacin molecules are potential urease inhibitors for treating ureolytic bacterial infections
Samia S. Alkhalil
Materials Express (2024) Vol. 14, Iss. 4, pp. 558-571
Closed Access | Times Cited: 1
Characterization of Urease Active Calcite-Producing Strain YX-3 Combined with the Whole Genome
Shuqi Zhang, Shichuang Liu, Mengyao Chen, et al.
Environmental Research (2024) Vol. 262, pp. 119855-119855
Closed Access | Times Cited: 1
Theoretical Study on the Disparate Spatial Arrangement of 3’,4’,5,7-tetrahydroxy-3-flavene Towards Jack Bean Urease Enzyme Active Site
Mohd Hafiz Yaakob, Zaidi Ab Ghani, Shukor Sanim Mohd Fauzi, et al.
Malaysian Journal of Fundamental and Applied Sciences (2024) Vol. 20, Iss. 4, pp. 779-789
Open Access | Times Cited: 1
Molecular Basis of the Substrate Specificity of Phosphotriesterase from Pseudomonas diminuta: A Combined QM/MM MD and Electron Density Study
Т. И. Мулашкина, A. M. Kulakova, Maria G. Khrenova
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 18, pp. 7035-7045
Closed Access | Times Cited: 1
Microbial-Induced Calcium Carbonate Precipitation – A Potentially Sustainable Approach for Geo-environmental Challenges: A Retrospection into the Mechanism, Influencing Factors, Characterization, and Applications
S. Sarma, Anil Kumar Mishra
Geomicrobiology Journal (2024), pp. 1-18
Closed Access | Times Cited: 1
Random Forest Classifier of Heme Proteins Using Porphyrin Distortions and Axial Ligands of Heme
H. Fujikawa, Hiroko Kondo, Yusuke Kanematsu, et al.
Chemistry Letters (2023) Vol. 52, Iss. 6, pp. 503-507
Closed Access | Times Cited: 1
AutoParams: An Automated Web-Based Tool To Generate Force Field Parameters for Molecular Dynamics Simulations
Mark A. Hix, Alice R. Walker
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 20, pp. 6293-6301
Closed Access | Times Cited: 1
Imidazo[4,5-a]acridines and Pyrazolo[4,3-a]acridines as a New Class of Urease Inhibitors: Synthesis, In Vitro Interactions, and Molecular Docking Studies
Javad Mohammadi, Mehdi Pordel, Mohammad Reza Bozorgmehr
Pharmaceutical Chemistry Journal (2024) Vol. 57, Iss. 12, pp. 1918-1928
Closed Access
Elucidating the Enzymatic Mechanism of Dihydrocoumarin Degradation: Insight into the Functional Evolution of Methyl-Parathion Hydrolase from QM/MM and MM MD Simulations
Yuzhuang Fu, Jun Yu, Fangfang Fan, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 23, pp. 5567-5575
Closed Access
Broadening the Scope of van Leusen Reaction: Investigation of Benzofuro[2,3‐d]imidazole Formation
Paulina Kaziukonytė, Vilius Petraška, Visvaldas Kairys, et al.
Asian Journal of Organic Chemistry (2024) Vol. 13, Iss. 8
Closed Access
Origins of Catalysis in Non‐Heme Fe(II)/2‐Oxoglutarate‐Dependent Histone Lysine Demethylase KDM4A with Differently Methylated Histone H3 Peptides
Sudheesh Devadas, Midhun George Thomas, Simahudeen Bathir Jaber Sathik Rifayee, et al.
Chemistry - A European Journal (2024)
Closed Access
Exploration of urease-aided calcium carbonate mineralization by enzyme analyses of Neobacillus mesonae strain NS-6
Zhiwei Ma, Mengyao Chen, Juncheng Lu, et al.
Microbiology Spectrum (2024)
Open Access
Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network
Hiroko Kondo, Hiroyuki Iizuka, Gen Masumoto, et al.
(2022)
Open Access | Times Cited: 1
AutoParams: An Automated Web-Based Tool To Generate Force Field Parameters for Molecular Dynamics Simulations
Mark A. Hix, Alice R. Walker
(2023)
Open Access
AutoParams: An Automated Web-Based Tool To Generate Force Field Parameters for Molecular Dynamics Simulations
Mark A. Hix, Alice R. Walker
(2023)
Open Access
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