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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton, Andrew Adey, Rupali P Patwardhan, et al.
Nature Biotechnology (2013) Vol. 31, Iss. 12, pp. 1119-1125
Open Access | Times Cited: 1377

Showing 1-25 of 1377 citing articles:

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
Sergey Koren, Brian P. Walenz, Konstantin Berlin, et al.
Genome Research (2017) Vol. 27, Iss. 5, pp. 722-736
Open Access | Times Cited: 6369
Shifting the limits in wheat research and breeding using a fully annotated reference genome
R. Appels, Kellye Eversole, Nils Stein, et al.
Science (2018) Vol. 361, Iss. 6403
Open Access | Times Cited: 2779
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer, et al.
Science (2017) Vol. 356, Iss. 6333, pp. 92-95
Open Access | Times Cited: 2086
A chromosome conformation capture ordered sequence of the barley genome
Martin Mascher, Heidrun Gundlach, Axel Himmelbach, et al.
Nature (2017) Vol. 544, Iss. 7651, pp. 427-433
Open Access | Times Cited: 1334
YaHS: yet another Hi-C scaffolding tool
Chenxi Zhou, Shane McCarthy, Richard Durbin
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 1250
The Third Revolution in Sequencing Technology
Erwin L. van Dijk, Yan Jaszczyszyn, Delphine Naquin, et al.
Trends in Genetics (2018) Vol. 34, Iss. 9, pp. 666-681
Closed Access | Times Cited: 958
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
Konstantin Berlin, Sergey Koren, Chen-Shan Chin, et al.
Nature Biotechnology (2015) Vol. 33, Iss. 6, pp. 623-630
Open Access | Times Cited: 944
DNA sequencing at 40: past, present and future
Jay Shendure, Shankar Balasubramanian, George M. Church, et al.
Nature (2017) Vol. 550, Iss. 7676, pp. 345-353
Closed Access | Times Cited: 939
Genome evolution in the allotetraploid frog Xenopus laevis
Adam M. Session, Yoshinobu Uno, Taejoon Kwon, et al.
Nature (2016) Vol. 538, Iss. 7625, pp. 336-343
Open Access | Times Cited: 934
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
Nicholas H. Putnam, Brendan L. O′Connell, Jonathan C. Stites, et al.
Genome Research (2016) Vol. 26, Iss. 3, pp. 342-350
Open Access | Times Cited: 792
Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
Raz Avni, Moran Nave, Omer Barad, et al.
Science (2017) Vol. 357, Iss. 6346, pp. 93-97
Closed Access | Times Cited: 762
Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense
Maojun Wang, Lili Tu, Daojun Yuan, et al.
Nature Genetics (2018) Vol. 51, Iss. 2, pp. 224-229
Open Access | Times Cited: 653
Structural variation in the 3D genome
Malte Spielmann, Darío G. Lupiáñez, Stefan Mundlos
Nature Reviews Genetics (2018) Vol. 19, Iss. 7, pp. 453-467
Closed Access | Times Cited: 633
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Jay Ghurye, Arang Rhie, Brian P. Walenz, et al.
PLoS Computational Biology (2019) Vol. 15, Iss. 8, pp. e1007273-e1007273
Open Access | Times Cited: 626
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 597
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
Derek M. Bickhart, Benjamin D. Rosen, Sergey Koren, et al.
Nature Genetics (2017) Vol. 49, Iss. 4, pp. 643-650
Open Access | Times Cited: 594
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Jisen Zhang, Xingtan Zhang, Haibao Tang, et al.
Nature Genetics (2018) Vol. 50, Iss. 11, pp. 1565-1573
Open Access | Times Cited: 571
The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication
Weijian Zhuang, Hua Chen, Meng Yang, et al.
Nature Genetics (2019) Vol. 51, Iss. 5, pp. 865-876
Open Access | Times Cited: 527
Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat
Hongwei Wang, Silong Sun, Wenyang Ge, et al.
Science (2020) Vol. 368, Iss. 6493
Closed Access | Times Cited: 514
Piercing the dark matter: bioinformatics of long-range sequencing and mapping
Fritz J. Sedlazeck, Hayan Lee, Charlotte A. Darby, et al.
Nature Reviews Genetics (2018) Vol. 19, Iss. 6, pp. 329-346
Closed Access | Times Cited: 495
Structural variation in the sequencing era
Steve S. Ho, Alexander E. Urban, Ryan E. Mills
Nature Reviews Genetics (2019) Vol. 21, Iss. 3, pp. 171-189
Open Access | Times Cited: 487
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Yanli Wang, Fan Song, Bo Zhang, et al.
Genome biology (2018) Vol. 19, Iss. 1
Open Access | Times Cited: 463
Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data
Xingtan Zhang, Shengcheng Zhang, Qian Zhao, et al.
Nature Plants (2019) Vol. 5, Iss. 8, pp. 833-845
Closed Access | Times Cited: 461
One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
Sergey Koren, Adam M. Phillippy
Current Opinion in Microbiology (2014) Vol. 23, pp. 110-120
Open Access | Times Cited: 427
Integrative detection and analysis of structural variation in cancer genomes
Jesse R. Dixon, Jie Xu, Vishnu Dileep, et al.
Nature Genetics (2018) Vol. 50, Iss. 10, pp. 1388-1398
Open Access | Times Cited: 386
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