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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Stefanía Magnúsdóttir, Almut Heinken, Laura Kutt, et al.
Nature Biotechnology (2016) Vol. 35, Iss. 1, pp. 81-89
Open Access | Times Cited: 737

Showing 1-25 of 737 citing articles:

The Microbiota-Gut-Brain Axis
John F. Cryan, Kenneth J. O’Riordan, Caitlin S.M. Cowan, et al.
Physiological Reviews (2019) Vol. 99, Iss. 4, pp. 1877-2013
Open Access | Times Cited: 3485
MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
Achal Dhariwal, Jasmine Chong, Salam M. Habib, et al.
Nucleic Acids Research (2017) Vol. 45, Iss. W1, pp. W180-W188
Open Access | Times Cited: 1628
KBase: The United States Department of Energy Systems Biology Knowledgebase
Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry, et al.
Nature Biotechnology (2018) Vol. 36, Iss. 7, pp. 566-569
Open Access | Times Cited: 1245
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, et al.
Nature Protocols (2019) Vol. 14, Iss. 3, pp. 639-702
Open Access | Times Cited: 1097
Current status and applications of genome-scale metabolic models
Changdai Gu, Gi Bae Kim, Won Jun Kim, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 650
Human Gut Microbiome: Function Matters
Anna Heintz‐Buschart, Paul Wilmes
Trends in Microbiology (2017) Vol. 26, Iss. 7, pp. 563-574
Closed Access | Times Cited: 619
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
Daniel Machado, Sergej Andrejev, Melanie Tramontano, et al.
Nucleic Acids Research (2018) Vol. 46, Iss. 15, pp. 7542-7553
Open Access | Times Cited: 563
Linking Plant Secondary Metabolites and Plant Microbiomes: A Review
Zhiqiang Pang, Jia Chen, Tuhong Wang, et al.
Frontiers in Plant Science (2021) Vol. 12
Open Access | Times Cited: 476
Systems Metabolic Engineering Strategies: Integrating Systems and Synthetic Biology with Metabolic Engineering
Kyeong Rok Choi, Woo Dae Jang, Dongsoo Yang, et al.
Trends in biotechnology (2019) Vol. 37, Iss. 8, pp. 817-837
Closed Access | Times Cited: 467
MEMOTE for standardized genome-scale metabolic model testing
Christian Lieven, Moritz Emanuel Beber, Brett G. Olivier, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 3, pp. 272-276
Open Access | Times Cited: 420
Microbial network disturbances in relapsing refractory Crohn’s disease
Bahtiyar Yılmaz, Pascal Juillerat, Ove Øyås, et al.
Nature Medicine (2019) Vol. 25, Iss. 2, pp. 323-336
Closed Access | Times Cited: 350
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
Alberto Noronha, Jennifer Modamio, Yohan Jarosz, et al.
Nucleic Acids Research (2018) Vol. 47, Iss. D1, pp. D614-D624
Open Access | Times Cited: 333
Mass spectrometry-based metabolomics in microbiome investigations
Anelize Bauermeister, Helena Mannochio-Russo, Letícia V. Costa‐Lotufo, et al.
Nature Reviews Microbiology (2021) Vol. 20, Iss. 3, pp. 143-160
Open Access | Times Cited: 328
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
Hao Wang, Simonas Marcišauskas, Benjamín J. Sánchez, et al.
PLoS Computational Biology (2018) Vol. 14, Iss. 10, pp. e1006541-e1006541
Open Access | Times Cited: 316
Metabolomics and lipidomics in NAFLD: biomarkers and non-invasive diagnostic tests
Mojgan Masoodi, Amalia Gastaldelli, Tuulia Hyötyläinen, et al.
Nature Reviews Gastroenterology & Hepatology (2021) Vol. 18, Iss. 12, pp. 835-856
Closed Access | Times Cited: 315
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
Denis Bertrand, Jim Shaw, Manesh Kalathiyappan, et al.
Nature Biotechnology (2019) Vol. 37, Iss. 8, pp. 937-944
Closed Access | Times Cited: 308
The Relationship Between the Human Genome and Microbiome Comes into View
Julia K. Goodrich, Emily Davenport, Andrew G. Clark, et al.
Annual Review of Genetics (2017) Vol. 51, Iss. 1, pp. 413-433
Open Access | Times Cited: 284
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
Almut Heinken, Dmitry A. Ravcheev, Federico Baldini, et al.
Microbiome (2019) Vol. 7, Iss. 1
Open Access | Times Cited: 278
Advancing functional and translational microbiome research using meta-omics approaches
Xu Zhang, Leyuan Li, James Butcher, et al.
Microbiome (2019) Vol. 7, Iss. 1
Open Access | Times Cited: 264
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
Eugen Bauer, Johannes Zimmermann, Federico Baldini, et al.
PLoS Computational Biology (2017) Vol. 13, Iss. 5, pp. e1005544-e1005544
Open Access | Times Cited: 258
Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture
Chrats Melkonian, Willi Gottstein, Sonja Blasche, et al.
Frontiers in Microbiology (2019) Vol. 10
Open Access | Times Cited: 255
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
Melanie Tramontano, Sergej Andrejev, Mihaela Pruteanu, et al.
Nature Microbiology (2018) Vol. 3, Iss. 4, pp. 514-522
Closed Access | Times Cited: 253
Machine and deep learning meet genome-scale metabolic modeling
Guido Zampieri, Supreeta Vijayakumar, Elisabeth Yaneske, et al.
PLoS Computational Biology (2019) Vol. 15, Iss. 7, pp. e1007084-e1007084
Open Access | Times Cited: 251
Understanding Competition and Cooperation within the Mammalian Gut Microbiome
Katharine Z. Coyte, Seth Rakoff-Nahoum
Current Biology (2019) Vol. 29, Iss. 11, pp. R538-R544
Open Access | Times Cited: 248
Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components
Cathy Lordan, Dinesh Thapa, R. Paul Ross, et al.
Gut Microbes (2019) Vol. 11, Iss. 1, pp. 1-20
Open Access | Times Cited: 240
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