OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA–seq
Björn Reinius, Jeff E. Mold, Daniel Ramsköld, et al.
Nature Genetics (2016) Vol. 48, Iss. 11, pp. 1430-1435
Open Access | Times Cited: 155

Showing 1-25 of 155 citing articles:

Comparative Analysis of Single-Cell RNA Sequencing Methods
Christoph Ziegenhain, Beate Vieth, Swati Parekh, et al.
Molecular Cell (2017) Vol. 65, Iss. 4, pp. 631-643.e4
Open Access | Times Cited: 1352

Landscape of X chromosome inactivation across human tissues
Taru Tukiainen, Alexandra–Chloé Villani, Angela Yen, et al.
Nature (2017) Vol. 550, Iss. 7675, pp. 244-248
Open Access | Times Cited: 927

A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications
Ashraful Haque, Jessica A. Engel, Sarah A. Teichmann, et al.
Genome Medicine (2017) Vol. 9, Iss. 1
Open Access | Times Cited: 908

Revealing the vectors of cellular identity with single-cell genomics
Allon Wagner, Aviv Regev, Nir Yosef
Nature Biotechnology (2016) Vol. 34, Iss. 11, pp. 1145-1160
Open Access | Times Cited: 626

Single-cell RNA counting at allele and isoform resolution using Smart-seq3
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 6, pp. 708-714
Open Access | Times Cited: 550

Genomic encoding of transcriptional burst kinetics
Anton J. M. Larsson, Per Johnsson, Michael Hagemann-Jensen, et al.
Nature (2018) Vol. 565, Iss. 7738, pp. 251-254
Open Access | Times Cited: 499

Single-cell RNA sequencing: Technical advancements and biological applications
Eva Hedlund, Qiaolin Deng
Molecular Aspects of Medicine (2017) Vol. 59, pp. 36-46
Closed Access | Times Cited: 327

MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions
Yael Baran, Akhiad Bercovich, Arnau Sebé-Pedrós, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 321

Direct Comparative Analyses of 10X Genomics Chromium and Smart-Seq2
Xiliang Wang, Yao He, Qiming Zhang, et al.
Genomics Proteomics & Bioinformatics (2021) Vol. 19, Iss. 2, pp. 253-266
Open Access | Times Cited: 248

Using single‐cell genomics to understand developmental processes and cell fate decisions
Jonathan A. Griffiths, Antonio Scialdone, John C. Marioni
Molecular Systems Biology (2018) Vol. 14, Iss. 4
Open Access | Times Cited: 228

Clonally heritable gene expression imparts a layer of diversity within cell types
Jeff E. Mold, Martin H. Weissman, Michael Ratz, et al.
Cell Systems (2024) Vol. 15, Iss. 2, pp. 149-165.e10
Open Access | Times Cited: 24

Monoallelic expression can govern penetrance of inborn errors of immunity
O’Jay Stewart, Conor Gruber, Haley E. Randolph, et al.
Nature (2025)
Closed Access | Times Cited: 9

Single-Cell RNA-Seq Reveals Cellular Heterogeneity of Pluripotency Transition and X Chromosome Dynamics during Early Mouse Development
Shangli Cheng, Yu Pei, Liqun He, et al.
Cell Reports (2019) Vol. 26, Iss. 10, pp. 2593-2607.e3
Open Access | Times Cited: 132

Computational approaches for interpreting scRNA‐seq data
Raghd Rostom, Valentine Svensson, Sarah A. Teichmann, et al.
FEBS Letters (2017) Vol. 591, Iss. 15, pp. 2213-2225
Open Access | Times Cited: 127

Network analysis of transcriptomic diversity amongst resident tissue macrophages and dendritic cells in the mouse mononuclear phagocyte system
Kim Summers, Stephen J. Bush, David Hume
PLoS Biology (2020) Vol. 18, Iss. 10, pp. e3000859-e3000859
Open Access | Times Cited: 114

The genomic landscapes of individual melanocytes from human skin
Jessica Tang, Eleanor Fewings, Darwin Chang, et al.
Nature (2020) Vol. 586, Iss. 7830, pp. 600-605
Open Access | Times Cited: 104

SCALE: modeling allele-specific gene expression by single-cell RNA sequencing
Yuchao Jiang, Nancy Zhang, Mingyao Li
Genome biology (2017) Vol. 18, Iss. 1
Open Access | Times Cited: 103

Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells
Jin Xu, Ava C. Carter, Anne-Valérie Gendrel, et al.
Nature Genetics (2017) Vol. 49, Iss. 3, pp. 377-386
Open Access | Times Cited: 91

Extensive cellular heterogeneity of X inactivation revealed by single-cell allele-specific expression in human fibroblasts
Marco Garieri, Georgios Stamoulis, Xavier Blanc, et al.
Proceedings of the National Academy of Sciences (2018) Vol. 115, Iss. 51, pp. 13015-13020
Open Access | Times Cited: 91

Incomplete penetrance in primary immunodeficiency: a skeleton in the closet
Conor Gruber, Dusan Bogunovic
Human Genetics (2020) Vol. 139, Iss. 6-7, pp. 745-757
Open Access | Times Cited: 78

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench
Ruben Chazarra-Gil, Stijn van Dongen, Vladimir Yu Kiselev, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 7, pp. e42-e42
Open Access | Times Cited: 58

Transcriptional kinetics and molecular functions of long noncoding RNAs
Per Johnsson, Christoph Ziegenhain, Leonard Hartmanis, et al.
Nature Genetics (2022) Vol. 54, Iss. 3, pp. 306-317
Open Access | Times Cited: 46

Elastic dosage compensation by X-chromosome upregulation
Antonio Lentini, Huaitao Cheng, Joyce Noble, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 40

Neurovascular adaptations modulating cognition, mood, and stress responses
Laurence Dion‐Albert, Katarzyna Dudek, Scott J. Russo, et al.
Trends in Neurosciences (2023) Vol. 46, Iss. 4, pp. 276-292
Open Access | Times Cited: 30

Random allelic expression in the adult human body
Stephanie N. Kravitz, Elliott Ferris, Michael I. Love, et al.
Cell Reports (2023) Vol. 42, Iss. 1, pp. 111945-111945
Open Access | Times Cited: 24

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