Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

NAMD goes quantum: an integrative suite for hybrid simulations
Marcelo C. R. Melo, Rafael C. Bernardi, Till Rudack, et al.
Nature Methods (2018) Vol. 15, Iss. 5, pp. 351-354
Open Access | Times Cited: 208

Showing 1-25 of 208 citing articles:

The ORCA quantum chemistry program package
Frank Neese, Frank Wennmohs, Ute Becker, et al.
The Journal of Chemical Physics (2020) Vol. 152, Iss. 22
Open Access | Times Cited: 3384
Scalable molecular dynamics on CPU and GPU architectures with NAMD
J. C. Phillips, David J. Hardy, Julio D. C. Maia, et al.
The Journal of Chemical Physics (2020) Vol. 153, Iss. 4
Open Access | Times Cited: 2398
Empirical Scoring Functions for Structure-Based Virtual Screening: Applications, Critical Aspects, and Challenges
Isabella Alvim Guedes, Felipe Siconha S. Pereira, Laurent E. Dardenne
Frontiers in Pharmacology (2018) Vol. 9
Open Access | Times Cited: 259
Machine learning accelerates the investigation of targeted MOFs: Performance prediction, rational design and intelligent synthesis
Jing Lin, Zhimeng Liu, Yujie Guo, et al.
Nano Today (2023) Vol. 49, pp. 101802-101802
Closed Access | Times Cited: 43
Multiscale methods in drug design bridge chemical and biological complexity in the search for cures
Rommie E. Amaro, Adrian J. Mulholland
Nature Reviews Chemistry (2018) Vol. 2, Iss. 4
Open Access | Times Cited: 153
Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories
Marcelo C. R. Melo, Rafael C. Bernardi, César de la Fuente‐Núñez, et al.
The Journal of Chemical Physics (2020) Vol. 153, Iss. 13
Open Access | Times Cited: 124
Futuristic advance and perspective of deep eutectic solvent for extractive desulfurization of fuel oil: A review
Mohd Faridzuan Majid, Hayyiratul Fatimah Mohd Zaid, Chong Fai Kait, et al.
Journal of Molecular Liquids (2020) Vol. 306, pp. 112870-112870
Closed Access | Times Cited: 93
Synthetic Biology and Computer-Based Frameworks for Antimicrobial Peptide Discovery
Marcelo D. T. Torres, Jicong Cao, Octávio Luiz Franco, et al.
ACS Nano (2021) Vol. 15, Iss. 2, pp. 2143-2164
Open Access | Times Cited: 85
Streptavidin/biotin: Tethering geometry defines unbinding mechanics
Steffen M. Sedlak, Leonard C. Schendel, Hermann E. Gaub, et al.
Science Advances (2020) Vol. 6, Iss. 13
Open Access | Times Cited: 82
Molecular Basis of SARS-CoV-2 Infection and Rational Design of Potential Antiviral Agents: Modeling and Simulation Approaches
Antonio Francés‐Monerris, Cécilia Hognon, Tom Miclot, et al.
Journal of Proteome Research (2020) Vol. 19, Iss. 11, pp. 4291-4315
Open Access | Times Cited: 82
Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy
Rafael C. Bernardi, Ellis Durner, Constantin Schoeler, et al.
Journal of the American Chemical Society (2019) Vol. 141, Iss. 37, pp. 14752-14763
Open Access | Times Cited: 78
VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations
Mariano Spivak, John E. Stone, João V. Ribeiro, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 15, pp. 4664-4678
Closed Access | Times Cited: 37
Multiscale QM/MM modelling of catalytic systems with ChemShell
You Lü, Kakali Sen, Chin W. Yong, et al.
Physical Chemistry Chemical Physics (2023) Vol. 25, Iss. 33, pp. 21816-21835
Open Access | Times Cited: 30
The application of QM/MM simulations in heterogeneous catalysis
Gabriel A. Bramley, Owain T. Beynon, P. V. Stishenko, et al.
Physical Chemistry Chemical Physics (2023) Vol. 25, Iss. 9, pp. 6562-6585
Open Access | Times Cited: 29
Condensed Matter Systems Exposed to Radiation: Multiscale Theory, Simulations, and Experiment
Andrey V. Solov’yov, Alexey V. Verkhovtsev, N. J. Mason, et al.
Chemical Reviews (2024) Vol. 124, Iss. 13, pp. 8014-8129
Open Access | Times Cited: 9
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 25, pp. 6028-6048
Open Access | Times Cited: 9
Toward computer-made artificial antibiotics
Marcelo D. T. Torres, César de la Fuente‐Núñez
Current Opinion in Microbiology (2019) Vol. 51, pp. 30-38
Closed Access | Times Cited: 73
Simulating protein–ligand binding with neural network potentials
Shae-Lynn Lahey, Christopher N. Rowley
Chemical Science (2020) Vol. 11, Iss. 9, pp. 2362-2368
Open Access | Times Cited: 67
Direction Matters: Monovalent Streptavidin/Biotin Complex under Load
Steffen M. Sedlak, Leonard C. Schendel, Marcelo C. R. Melo, et al.
Nano Letters (2018) Vol. 19, Iss. 6, pp. 3415-3421
Open Access | Times Cited: 65
High force catch bond mechanism of bacterial adhesion in the human gut
Zhaowei Liu, Haipei Liu, Andrés Manuel Vera, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 55
Structure–Spectroscopy Correlations for Intermediate Q of Soluble Methane Monooxygenase: Insights from QM/MM Calculations
Christine Schulz, Rebeca G. Castillo, Dimitrios A. Pantazis, et al.
Journal of the American Chemical Society (2021) Vol. 143, Iss. 17, pp. 6560-6577
Open Access | Times Cited: 50
Resolving Chemical Dynamics in Biological Energy Conversion: Long-Range Proton-Coupled Electron Transfer in Respiratory Complex I
Ville R. I. Kaila
Accounts of Chemical Research (2021) Vol. 54, Iss. 24, pp. 4462-4473
Open Access | Times Cited: 50
Molecular Dynamics for Antimicrobial Peptide Discovery
Nicholas J. Palmer, Jacqueline R. M. A. Maasch, Marcelo D. T. Torres, et al.
Infection and Immunity (2021) Vol. 89, Iss. 4
Open Access | Times Cited: 49
Learning molecular potentials with neural networks
Hatice Gökcan, Olexandr Isayev
Wiley Interdisciplinary Reviews Computational Molecular Science (2021) Vol. 12, Iss. 2
Closed Access | Times Cited: 43
Reprogramming biological peptides to combat infectious diseases
Marcelo D. T. Torres, César de la Fuente‐Núñez
Chemical Communications (2019) Vol. 55, Iss. 100, pp. 15020-15032
Open Access | Times Cited: 53
Page 1 - Next Page

Scroll to top