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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

MINERVA—a platform for visualization and curation of molecular interaction networks
Piotr Gawron, Marek Ostaszewski, Venkata Satagopam, et al.
npj Systems Biology and Applications (2016) Vol. 2, Iss. 1
Open Access | Times Cited: 90

Showing 1-25 of 90 citing articles:

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, et al.
Nature Protocols (2019) Vol. 14, Iss. 3, pp. 639-702
Open Access | Times Cited: 1094
From hype to reality: data science enabling personalized medicine
Holger Fröhlich, Rudi Balling, Niko Beerenwinkel, et al.
BMC Medicine (2018) Vol. 16, Iss. 1
Open Access | Times Cited: 370
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
Alberto Noronha, Jennifer Modamio, Yohan Jarosz, et al.
Nucleic Acids Research (2018) Vol. 47, Iss. D1, pp. D614-D624
Open Access | Times Cited: 330
Reactome diagram viewer: data structures and strategies to boost performance
Antonio Fabregat, Konstantinos Sidiropoulos, Guilherme Viteri, et al.
Bioinformatics (2017) Vol. 34, Iss. 7, pp. 1208-1214
Open Access | Times Cited: 172
The Atlas of Inflammation Resolution (AIR)
Charles N. Serhan, Shailendra K. Gupta, Mauro Perretti, et al.
Molecular Aspects of Medicine (2020) Vol. 74, pp. 100894-100894
Open Access | Times Cited: 144
Reactome enhanced pathway visualization
Konstantinos Sidiropoulos, Guilherme Viteri, Cristoffer Sevilla, et al.
Bioinformatics (2017) Vol. 33, Iss. 21, pp. 3461-3467
Open Access | Times Cited: 164
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms
Alexander Mazein, Marek Ostaszewski, Inna Kuperstein, et al.
npj Systems Biology and Applications (2018) Vol. 4, Iss. 1
Open Access | Times Cited: 106
Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets
Nicolas Sompairac, Petr V. Nazarov, Urszula Czerwińska, et al.
International Journal of Molecular Sciences (2019) Vol. 20, Iss. 18, pp. 4414-4414
Open Access | Times Cited: 82
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, et al.
Molecular Systems Biology (2021) Vol. 17, Iss. 10
Open Access | Times Cited: 79
Neurodegeneration and neuroinflammation are linked, but independent of alpha‐synuclein inclusions, in a seeding/spreading mouse model of Parkinson's disease
Pierre Garcia, Wiebke M. Wemheuer, Oihane Uriarte Huarte, et al.
Glia (2022) Vol. 70, Iss. 5, pp. 935-960
Open Access | Times Cited: 54
Leigh map: A novel computational diagnostic resource for mitochondrial disease
Joyeeta Rahman, Alberto Noronha, Ines Thiele, et al.
Annals of Neurology (2016) Vol. 81, Iss. 1, pp. 9-16
Open Access | Times Cited: 79
ReconMap: an interactive visualization of human metabolism
Alberto Noronha, Anna Dröfn Daníelsdóttir, Piotr Gawron, et al.
Bioinformatics (2016) Vol. 33, Iss. 4, pp. 605-607
Open Access | Times Cited: 67
Community-driven roadmap for integrated disease maps
Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, et al.
Briefings in Bioinformatics (2018) Vol. 20, Iss. 2, pp. 659-670
Open Access | Times Cited: 63
Boolean modelling as a logic-based dynamic approach in systems medicine
Ahmed Abdelmonem Hemedan, Anna Niarakis, Reinhard Schneider, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 3161-3172
Open Access | Times Cited: 38
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches
Anna Niarakis, Marek Ostaszewski, Alexander Mazein, et al.
Frontiers in Immunology (2024) Vol. 14
Open Access | Times Cited: 5
Comprehensive molecular interaction map of TGFβ induced epithelial to mesenchymal transition in breast cancer
Sai Bhavani Gottumukkala, Trivadi S. Ganesan, Anbumathi Palanisamy
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 5
Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases
Venkata Satagopam, Wei Gu, Serge Eifes, et al.
Big Data (2016) Vol. 4, Iss. 2, pp. 97-108
Open Access | Times Cited: 47
RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis
Vidisha Singh, George D. Kalliolias, Marek Ostaszewski, et al.
Database (2020) Vol. 2020
Open Access | Times Cited: 35
Using interactive platforms to encode, manage and explore immune-related adverse outcome pathways
Alexander Mazein, Muhammad Shoaib, Miriam Alb, et al.
Journal of Immunotoxicology (2024) Vol. 21, Iss. sup1
Open Access | Times Cited: 4
Non-small cell lung cancer map and analysis: exploring interconnected oncogenic signal integrators
Sai Bhavani Gottumukkala, Anbumathi Palanisamy
Mammalian Genome (2025)
Closed Access
MINERVA API and plugins: opening molecular network analysis and visualization to the community
David Hoksza, Piotr Gawron, Marek Ostaszewski, et al.
Bioinformatics (2019) Vol. 35, Iss. 21, pp. 4496-4498
Open Access | Times Cited: 34
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop
Anna Niarakis, Martin Kuiper, Marek Ostaszewski, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 2, pp. 1848-1859
Open Access | Times Cited: 31
Large-scale knowledge graph representations of disease processes
Matti Hoch, Shailendra Gupta, Olaf Wolkenhauer
Current Opinion in Systems Biology (2024) Vol. 38, pp. 100517-100517
Open Access | Times Cited: 3
The Phosphatase PRL-3 Is Involved in Key Steps of Cancer Metastasis
Laura Duciel, Luis Cristóbal Monraz Gómez, Maria Kondratova, et al.
Journal of Molecular Biology (2019) Vol. 431, Iss. 17, pp. 3056-3067
Open Access | Times Cited: 29
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance
Alexander Mazein, Márcio Luís Acencio, Irina Balaur, et al.
Frontiers in Bioinformatics (2023) Vol. 3
Open Access | Times Cited: 8
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