Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 586

Showing 1-25 of 586 citing articles:

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Francesco Beghini, Lauren J. McIver, Aitor Blanco‐Míguez, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 1417
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Aitor Blanco‐Míguez, Francesco Beghini, Fabio Cumbo, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 11, pp. 1633-1644
Open Access | Times Cited: 568
Prevotella diversity, niches and interactions with the human host
Adrian Tett, Edoardo Pasolli, Giulia Masetti, et al.
Nature Reviews Microbiology (2021) Vol. 19, Iss. 9, pp. 585-599
Open Access | Times Cited: 464
Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver
Alice Bertocchi, Sara Carloni, Paola Simona Ravenda, et al.
Cancer Cell (2021) Vol. 39, Iss. 5, pp. 708-724.e11
Open Access | Times Cited: 336
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
Edoardo Pasolli, Francesca De Filippis, Italia Elisa Mauriello, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 264
The person-to-person transmission landscape of the gut and oral microbiomes
Mireia Valles‐Colomer, Aitor Blanco‐Míguez, Paolo Manghi, et al.
Nature (2023) Vol. 614, Iss. 7946, pp. 125-135
Open Access | Times Cited: 258
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases
Gianluca Ianiro, Michal Punčochář, Nicolai Karcher, et al.
Nature Medicine (2022) Vol. 28, Iss. 9, pp. 1913-1923
Open Access | Times Cited: 198
Reconstruction of ancient microbial genomes from the human gut
Marsha C. Wibowo, Zhen Yang, Maxime Borry, et al.
Nature (2021) Vol. 594, Iss. 7862, pp. 234-239
Open Access | Times Cited: 184
Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome
Congying Chen, Yunyan Zhou, Hao Fu, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 180
UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis
Jihyeon Kim, Seong-In Na, Dongwook Kim, et al.
The Journal of Microbiology (2021) Vol. 59, Iss. 6, pp. 609-615
Open Access | Times Cited: 167
Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Raúl Riesco, Martha E. Trujillo
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2024) Vol. 74, Iss. 3
Open Access | Times Cited: 164
Diversity and functional landscapes in the microbiota of animals in the wild
Doron Levin, Neta Raab, Yishay Pinto, et al.
Science (2021) Vol. 372, Iss. 6539
Closed Access | Times Cited: 156
Multi-omics data integration considerations and study design for biological systems and disease
Stefan Graw, Kevin Chappell, Charity L. Washam, et al.
Molecular Omics (2020) Vol. 17, Iss. 2, pp. 170-185
Open Access | Times Cited: 155
A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Chao Yang, Debajyoti Chowdhury, Zhenmiao Zhang, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 6301-6314
Open Access | Times Cited: 155
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture
Rachel Gilroy, Anuradha Ravi, María Getino, et al.
PeerJ (2021) Vol. 9, pp. e10941-e10941
Open Access | Times Cited: 145
The phyllosphere microbiome shifts toward combating melanose pathogen
Pudong Li, Zeng‐Rong Zhu, Yunzeng Zhang, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 142
Codiversification of gut microbiota with humans
Taichi A. Suzuki, J. Liam Fitzstevens, Victor T. Schmidt, et al.
Science (2022) Vol. 377, Iss. 6612, pp. 1328-1332
Open Access | Times Cited: 131
Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome
Matthew G. Durrant, Alison Fanton, Josh Tycko, et al.
Nature Biotechnology (2022) Vol. 41, Iss. 4, pp. 488-499
Open Access | Times Cited: 131
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
Nicolai Karcher, Eleonora Nigro, Michal Punčochář, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 114
Phylogenies of the 16S rRNA gene and its hypervariable regions lack concordance with core genome phylogenies
Hayley B. Hassler, Brett Probert, Carson Paige Moore, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 101
Importance of Bacteroidetes in host–microbe interactions and ecosystem functioning
Xinya Pan, Jos M. Raaijmakers, Víctor J. Carrión
Trends in Microbiology (2023) Vol. 31, Iss. 9, pp. 959-971
Open Access | Times Cited: 99
An expanded reference map of the human gut microbiome reveals hundreds of previously unknown species
Sigal Leviatan, Saar Shoer, Daphna Rothschild, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 98
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
Qiyun Zhu, Shi Huang, Antonio González, et al.
mSystems (2022) Vol. 7, Iss. 2
Open Access | Times Cited: 76
A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources
Bin Ma, Caiyu Lu, Yiling Wang, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 60
A pan-cancer analysis of the microbiome in metastatic cancer
Thomas Battaglia, Iris Mimpen, Joleen J.H. Traets, et al.
Cell (2024) Vol. 187, Iss. 9, pp. 2324-2335.e19
Open Access | Times Cited: 57
Page 1 - Next Page

Scroll to top